barSeed - Barley Seed Development Database

Probe CUST_24229_PI390587928

Source Contig U35_20758

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24229_PI390587928	Hv_44K_v2	CATGCCCATCTTGAAATAAAATTATGAGATGTGATCCTGTTATGCTAGTGGTTTCTTACC	315	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.322	0.532	1.138	1.405	0.955	1.393
Raw	3640.847	9599.623	17679.700	29665.900	8388.783	13291.977

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_23448.1	661	8e-25	377 - 436	100	60 / 60	plus
JLOC1	JLOC1_54068.1	469	2e-21	377 - 436	97	58 / 60	plus
Harvest35	U35_20758	420	3e-25	316 - 375	100	60 / 60	plus

Contig Sequence (420 bp)

>U35_20758 420 Hv_44K_v2
GAGGCTCAATAGGAGGACTCACTTGTATGGCGAAGCTTACGATGAACGGAACCAGGGTGG
TCATGATTATGATAGTTATCCTCGCTTGTACCATGATTCAATCGGAGTGTCGACCAATTG
AGCAGATGAACAACAACAAGCTCCAAATGTGCCTGTGCTCACGGATAAATAAAGTTTACT
GCTGTGACTTAGGAGGTGGTTGCTATCGAGATGAATTACAATGCATAAAAGGTTGTGCTC
CTGGATGCAAGCGATCTCATACCTTGACAGAGCCATGAGCAAGCACTACATATGATTTAT
CGTGAGAAATTATGTCATGCCCATCTTGAAATAAAATTATGAGATGTGATCCTGTTATGC
TAGTGGTTTCTTACCTTTATGATTCTCATATACTAATATTTACAAAAAAAAAAAAAAAAA

Homology of Contig U35_20758 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None