- Probe CUST_24226_PI390587928
- Source Contig U35_32733
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24226_PI390587928 | Hv_44K_v2 | TGTAGTGCTTGACCATACATTTGCGTTACTAGAGTCCACTGAACCAAAGTTGCTGCAACT | 243 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.933 | 1.424 | 0.884 | 0.896 | 1.090 | 0.971 |
| Raw | 5.171 | 13.138 | 6.981 | 12.151 | 3.274 | 2.993 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_34728.3 | 1212 | 2e-24 | 1058 - 1117 | 100 | 60 / 60 | plus | ABC11628 |
| MLOC | MLOC_34728.1 | 1178 | 2e-24 | 966 - 1025 | 100 | 60 / 60 | plus | ABC11628 |
| MLOC | MLOC_34728.2 | 1106 | 2e-24 | 894 - 953 | 100 | 60 / 60 | plus | ABC11628 |
| JLOC1 | JLOC1_22424.2 | 1059 | 8e-25 | 838 - 897 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_22424.1 | 1119 | 8e-25 | 898 - 957 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_32733 | 303 | 3e-25 | 244 - 303 | 100 | 60 / 60 | plus |
Contig Sequence (303 bp)
>U35_32733 303 Hv_44K_v2 TCTGTGGTGCAACTGGCTCTTCACCTGTTCCTGCAATACGCGGCAAAGTACCGTCTGGTT CAGCTCGAGGAGAGCAATGGGTAAAGTCCTTGGCACATGCTCTGTCTCGCCTTACTGCCT GCACAAACGTTAGACTAGGATCTTACCTTTGAAGCCTAGGATCTGTCCTGCTATGTTACA AGAATGCTTCTCTCTGAGAAGGGAGTTAGGCCTACTAGTCTGCTATGTAATTGTTGCTGG CTGTGTAGTGCTTGACCATACATTTGCGTTACTAGAGTCCACTGAACCAAAGTTGCTGCA ACT
Homology of Contig U35_32733 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |