barSeed - Barley Seed Development Database

Probe CUST_24225_PI390587928

Source Contig U35_18440

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24225_PI390587928	Hv_44K_v2	TGCTTGGCAAATCTGTGTAACTGACTGCGTTCATAACCTGGAAAGTTTTTGACGCTCAAA	590	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18134.1	692	2e-23	1 - 58	100	58 / 58	minus	ABC10135 ABC10136 ABC13405
JLOC1	JLOC1_12539.1	735	1e-23	615 - 672	100	58 / 58	plus
Harvest21	ABC10135	616	1e-24	558 - 616	100	59 / 59	plus	ABC10135
Harvest21	ABC10136	527	1e-23	454 - 513	98	59 / 60	plus	ABC10136
Harvest35	U35_18440	665	3e-25	591 - 650	100	60 / 60	plus
Harvest35	U35_18441	527	1e-23	454 - 513	98	59 / 60	plus

Contig Sequence (665 bp)

>U35_18440 665 Hv_44K_v2
ACATGTCGGCGTCCCCTGCGGCGCTTGCTTTCCAATTAACCAGTCGCCTGCCTCCGCCCC
CTTCGCGAAGTTTCCCCGCTCCACAATTCCGCCATGGCCGGCGGCGGCATCTTCAGCAGG
GCGCTGAGCTACGTCGTCAACGAGTTCCTCGTGGAGGGCCTCGCAAACAACCGTGCCTTC
CAGAGGTTTGCTGTGAGGACCAACAAGACTTTGGAGAATCTCTCAACCAAAGCTAAACAA
GTGAGGGAGGAGGTGTCGGAGCAATTTAAGGATGCTCGCGGACCCGATGATCGCTTCAAG
CAGTGATACCTGCTATCAGCGCTCCTGGTTGTCTGTTCTTGTTCTGGTTTTGGATGCCAT
CCGCAAGCGTCCATTGTATAAAATCCGGATCTAAATTATCTTATTTTCTATTTAGAAATT
GAGAACTAGAGGCAGAGCACTGTTAGATTTCTGTAGCCTGCCCAACGGAACTAATTCTAG
AGGAGAGACTCTCCTTGGCTGGGCCTTGGTTTTACAAATTTCTATGATGCTTAATGTTGT
TTTATGAGTAATGCCATGTACCATTCGCAGTCTATCTGTTGTTATGCCCTTGCTTGGCAA
ATCTGTGTAACTGACTGCGTTCATAACCTGGAAAGTTTTTGACGCTCAAAAAAAAAAAAA
AAAAA

Homology of Contig U35_18440 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None