barSeed - Barley Seed Development Database

Probe CUST_24221_PI390587928

Source Contig U35_18443

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24221_PI390587928	Hv_44K_v2	CAAAAATGAACCTCCTATTATCATGTGACAGGTTAAGAAGAAGAAGAAGAGCACAATGGA	1287	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	16.583	20.147	1.524	0.270	0.778	0.548
Raw	281.254	459.464	31.531	6.271	8.796	7.140

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_25121.5	2811	2e-24	632 - 691	100	60 / 60	minus	ABC10617 ABC20326
MLOC	MLOC_25121.3	2930	2e-24	752 - 811	100	60 / 60	minus	ABC10617 ABC20326
MLOC	MLOC_25121.12	2320	2e-24	752 - 811	100	60 / 60	minus	ABC10617 ABC20326
MLOC	MLOC_47746.1	672	7e-23	172 - 231	98	59 / 60	plus	ABC10617
MLOC	MLOC_8500.9	766	3e-21	653 - 712	97	58 / 60	plus	ABC10617
MLOC	MLOC_8500.2	3432	3e-21	3318 - 3377	97	58 / 60	plus	ABC10617
JLOC1	JLOC1_30745.1	477	4e-23	14 - 73	98	59 / 60	plus
JLOC1	JLOC1_5649.1	3352	2e-21	3238 - 3297	97	58 / 60	plus
Harvest21	ABC10617	1908	3e-25	1288 - 1347	100	60 / 60	plus	ABC10617
Harvest35	U35_18443	1510	3e-25	1288 - 1347	100	60 / 60	plus

Contig Sequence (1510 bp)

>U35_18443 1510 Hv_44K_v2
GTGATTTGTAGGCCTTTCATATGCAATCCTGAATTAGTTTCATATCTGGTACTTACTATG
CAAACATCTTTGTTTCTTCTTTCTATTTGCATTTCTTTATGCCGAGGCCTTTCCTTCATC
CTAGATTAATGCTCTGCTAGTAATTCACGCTTCACTGATATTTGACATAGAAAATGATTG
TTTCCAATATTATCATATTAGGGTACCCCTATGCAAGTGTCAATTACGTACTTAGTAGTC
ACTGTTACCAAGGTTTCAGAAAATGAAGCGTGCACTTTTACAACTTTAATGCTACATATC
TTCTCATGAATTAAGGTTAGTAAGATTTTATTTTCGCACGTTTAAGTTATTCGTAATGAC
TTTTTCCTGAATGCTATAGACCTTCACTACCTGCATTGCCACGAAAGTACTCATCCGAAG
TGTATTAATATGTGTTCTGTACATTAATTTGAGGACTCAAATCGCCGTCCTCGTAGAACT
GCAAATCTTTGCAACCTATCCTTGAAGAGAGCACAAATATGGAGACTAGAAAACATATTT
TGTGCAGACACCCACCAACTTATGGCAACCTAATCACAATTCTCTCTATCGATGGTGGAG
GGATTTGAGGAATCATTCCAACTGTTGCTCTTGCCTTTCTAGAATCAGAGTTGCAGAAAC
TTGATGGAGCGGAAGCCCGGTTAGCAGACTACTTTGATGTCCTTGCTGGGACCAGCACAA
GGGGACCTGTGACTACCTTGCTCACTATACCAAATAAGAAGAGAAGACCAGTTTTTGCGG
CAAAGGATATTCAAGCATTTTATATGGACCATGCTCCCAGAATTTTCCCACAGCTCAGGG
GTGCATTTGGTAGGATAATGAGGATACTTCGCTCATTCTCAGGACCTTGTTATGATGGCA
AGTACCTTCATGAAGTTGTGAGAAAGAAGTTAGGAAGCGGCAGGCTGCATCAGACGTTAA
CAAATGTGGTAATACCGACTTTTGATATCAGGCGGCTACAATCAATCATGTTTTTGTCGT
ATGAGGTTTCCCACTTCCCCCCTCTCTCAAATCTTTTGGGAGACCTAATTTGAGTACCTG
TAAAATATGGTTGATGTTTCTTTGTATTGGATGCCAGTTATAGTAAATCAGAGCCAATTC
ACTTTAATTATAGTACAAGAAATACATGCTACTGAAATGCATATTTATTTGTTTTCGCTG
TAAATTTACTTCAAAGGGAGAAGATATGTACGAAGCAGAAGTGAGAAGTCGAGAACTTCC
ATTAATCTTTCATGATGGAAATTTGCACAAAAATGAACCTCCTATTATCATGTGACAGGT
TAAGAAGAAGAAGAAGAGCACAATGGATGCTTTGTTATCAGATATTTGCCTACTCATTAC
TTCAAGACTGAAGATTCTCATGGAAACACCAAGGAGTTTAATCTTATTGATGGGGGAGTA
GCTGCCAATAATCCGGTACTACAGCTGCCTGTAGTTTTGCATAACATACAGCTTGGGGCA
TGTGCTTGAT

Homology of Contig U35_18443 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g28770.1	406	3e-79	protein\|patatin, putative, expressed
Brachypodium v1_2	Bradi4g32370.1	405	6e-82
Arabidopsis v10	AT2G26560.1	407	1e-57	\| Symbols: PLP2, PLA IIA, PLA2A \| phospholipase A 2A \| chr2:11293912-11295708 REVERSE LENGTH=407