barSeed - Barley Seed Development Database

Probe CUST_24199_PI390587928

Source Contig U35_20768

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24199_PI390587928	Hv_44K_v2	TGCAGTAAGCATTTTCCTCCGGATGGTCAGTAAACATGGCTGTCAATCGTTGTTAAAAAA	1066	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75088.1	3296	9e-22	54 - 108	100	55 / 55	minus	ABC14644 ABC44963
MLOC	MLOC_75088.2	3151	9e-22	54 - 108	100	55 / 55	minus	ABC14644 ABC44963
MLOC	MLOC_75088.3	3265	9e-22	54 - 108	100	55 / 55	minus	ABC14644 ABC44963
JLOC1	JLOC1_50075.2	4498	5e-22	4441 - 4495	100	55 / 55	plus
JLOC1	JLOC1_50075.1	3070	5e-22	3013 - 3067	100	55 / 55	plus
Harvest35	U35_20768	1137	3e-25	1067 - 1126	100	60 / 60	plus

Contig Sequence (1137 bp)

>U35_20768 1137 Hv_44K_v2
GGGCACCGCCAAGTTCCCGGTGGTGCCGGAGACGACCATGAAGGCCATGCTGGAGGCCGT
GGAGCTCGGCTACCGCCACTTCGACACGGCCTCCATGTACGCGACGGAGCGGCCCCTGGG
CGAGGCCCTCGCGGAGGCGGTGCGCCGCGGGCTCCTGGCGTCCAGGGAGGAGGTGTTCGT
CACGTCCAAGCTCTGGTGCACGCAGTGCCACCCGCACCTCGTGCTCCCGTCGCTCCGGGA
GAGCCTCCGGAACCTGCAGATGGAGTACGTGGACCTGTACCTGATCCACTGGCCGATCAG
CCTGAAGCCCGGGCCGGCGGTGTTGCCGGTGAAGCGGGAGGAGGCCGTCCCGTTCGACTT
CGAGGGCGTGTGGCGGGGGATGGAGGAGTGCCACCGACTCGGGCTCGCCATGGCCATCGG
CGTCAGCAACTTCACCACCAGCCACCTCAACAAGCTCCTCGCCGCCGCCGCCGTCCCTCC
TGCAGTCAACCAGGTGGAGATGAACCCGGTGTGGCAGCAGAGGAAGCTGAGGGACTACTG
CGCCGAGAAGGGCATCCACATCGCGGCCTACTCGCCGCTGGGAGGGCAGAACTGGTCCGG
CGACGGAAGCGCCGTGCTGGACTCCGAGGTGCTCGCGGAGATCGCCGGGCTTAGAGGAAA
GACCGTCGCACAGGTCGCGCTGAGGTGGATCTACGAGCAAGGGGCGACCCCGATCGTCAA
GAGCTTCAGCAAGGAGAGGCTCGAGGAGAACCTCGGGATCTTCGACTGGGGGCTCACCGA
CGACGACCTGCGCAAGATCGACCAGATTCCGCAGAAGAAGATCGTCACGGCTGCAGGCGT
GCTGTTCTGCGCAGAGGGCGAGTTCACGTCGGCTGACATCGCAGACATGGAAATTGTCGA
GGAGTAGAATAGGCACTGAGAATTCGGATGTATGAGGTGAACTGCAGTAGCTTACTTAAA
GAGTGGGGTGAATATCGGTTATATATTATGTTATTCCTCTTTACGGATTCGAGTTAATTA
GCAGTGAAGATTGTGATCACCGTTGCCATCGGTCGGAAGTACCTTGTGCAGTAAGCATTT
TCCTCCGGATGGTCAGTAAACATGGCTGTCAATCGTTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20768 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g37490.1	358	2e-153	protein\|oxidoreductase, aldo/keto reductase family protein, putative, expressed
Brachypodium v1_2	Bradi5g11630.1	324	2e-173
Arabidopsis v10	AT1G59950.1	320	3e-97	NAD(P)-linked oxidoreductase superfamily protein \| chr1:22068033-22070588 REVERSE LENGTH=320