barSeed - Barley Seed Development Database

Probe CUST_24197_PI390587928

Source Contig U35_32741

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24197_PI390587928	Hv_44K_v2	CCTATGGTTTACCCCCTTAAATCTGTCATCGGGGTTATTTTAAAGTCTGCAGAGCGGAGT	37	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.649	1.353	1.202	0.715	0.626	0.491
Raw	194.595	209.517	191.931	154.904	54.149	47.059

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_32741	555	3e-25	38 - 97	100	60 / 60	minus

Contig Sequence (555 bp)

>U35_32741 555 Hv_44K_v2
TGGGCCCAATACCTGACATGCAACGAGCGGCCGCTCCACTCCGCTCTGCAGACTTTAAAA
TAACCCCGATGACAGATTTAAGGGGGTAAACCATAGGAGTATTTCCAGAACCAGTGAAAT
CCCTAACCTGCTTATTTAAAGTATTCAGAAGCAACTCCTCAATAAAGGTATGTTTGTCAG
CAGATGACAAGCTTTTGTCAGCTGGCATAATGTCACGCAGGAGATTATGAGTGTTNGTAC
TTATGCCGTATACTTCTTGCTCAAGAACTTCATCCCCAGGTACCTTTCTACGTTCCATAC
ATCCTTAACCTCTGGAATCTCCAAATTTTCAGTGCCATTTTTCTGTGAGAGCAACTTCTC
AGAGTAGTCATCAGGTAAAGCAACCCGCATTTTTCGTTGTACTTCCTCCAGCGGCCGCTG
GCAAAGAAGCTGGTGAACAGTCTGTGCTTTAAAGAGGGGACGACAAGTAGGAGACAGCGG
TGCACTGGTTTGGTGTTGCACTTTCAGTTTAATGTAATTTAGCTGATAAGATTGTGTGCA
TGTTGTTGTTCTGAA

Homology of Contig U35_32741 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None