barSeed - Barley Seed Development Database

Probe CUST_24196_PI390587928

Source Contig U35_18450

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24196_PI390587928	Hv_44K_v2	ATCATAAACGGGACAAGAGTAAACATAGAGAGAAGAAAGAGAGTGAACGTTCTAGCGGTC	383	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370235	958	2e-24	436 - 495	100	60 / 60	plus	ABC09037
MLOC	MLOC_11244.1	464	2e-24	363 - 422	100	60 / 60	minus	ABC09037
MLOC	MLOC_11244.3	586	2e-24	315 - 374	100	60 / 60	minus	ABC09037
JLOC1	JLOC1_7432.3	2968	8e-25	338 - 397	100	60 / 60	plus
Harvest21	ABC09037	913	3e-25	384 - 443	100	60 / 60	plus	ABC09037
Harvest35	U35_18450	913	3e-25	384 - 443	100	60 / 60	plus

Contig Sequence (913 bp)

>U35_18450 913 Hv_44K_v2
GCCTCGCCGCCGCCGCCGCCACCGCGACGACCCGCGAGCCATGGCGCCGTCCGCCAGCTC
CTCATCCTCCTCCTCCGACAGCACGGACTCCACCGGTTCCTCCTCCTCATCGGGGAGCGA
CCGCCGCGTCCGCCGCCGCCACAGCCGCCGCAAGGACGCCGCGCCGTCCACCTCCTCCTC
CTCCGCGCTCAAGGTGCGCAAGGACCGCAAGCCCCGCCACAAGCGCCGCCGCCGGGAGAG
GCGGAGGTCCCGTTCAGACGACGACGGCTACAGTAGCACAAGCTCTTATGATAGCGACCG
CGAGGCATCTGGCAGATCACGTAAGCATAAGAAGAGCAGTAGATCAAGGAAGTCTAGGGA
AAGAGAGCGAAGCAAGGATAGGCATCATAAACGGGACAAGAGTAAACATAGAGAGAAGAA
AGAGAGTGAACGTTCTAGCGGTCCGGTCCAGCTTTCCAAGTTCCTTGGTCGTGAGAAGGA
GGAAATCGGCAAAAGGAGTGTTATCTCCGGTAAAAAGATAATGATGAAGCTTGAGAAATC
CAAGGAAGATAAGGCGGCTGAGAGCAAGCGCAATGAACTGTTGAAGTTTCTGAATGCCAG
TTATGATTGACAACTTGTCGAAAGTGGTGATCCTGTCTGGATGGCTTGGATTTGTCTTGA
TGCCGCTGCTTAGTCACATCTGCGTTTGGTGATACCAAAAAGCTTTTTGTCCTGTTTTCT
AAAGTTATGACTCTGACCATCAGTGCTTTATATCGGTATTTTTGAGCTTGTTGGGGTGTT
TGTGTTCTCAAAACTTTGATCGTTGCCAGTTTGTACTTTGTAGCCTCCTTTTTGTAAGCC
TGTTTAACCTGGAGATATGCCAATTTTATAGAATTTTCCTGGAGTGGTACTTGCTCTAAA
AAAAAAAAAAAAA

Homology of Contig U35_18450 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None