barSeed - Barley Seed Development Database

Probe CUST_24195_PI390587928

Source Contig U35_18451

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24195_PI390587928	Hv_44K_v2	TTTTATAGAATTTTCCTGGAGTGGTACTTGCTCTAAGCTTGTCATACTGGATGTATTCTT	556	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11243.1	4190	2e-24	1735 - 1794	100	60 / 60	minus	ABC09037 ABC40815
MLOC	MLOC_11243.2	4267	2e-24	1822 - 1881	100	60 / 60	minus	ABC09037 ABC40815
JLOC1	JLOC1_7431.5	2080	8e-25	1675 - 1734	100	60 / 60	minus
JLOC1	JLOC1_7432.3	2968	8e-25	818 - 877	100	60 / 60	plus
JLOC1	JLOC1_7432.2	3343	8e-25	1193 - 1252	100	60 / 60	plus
JLOC1	JLOC1_7432.1	2852	8e-25	702 - 761	100	60 / 60	plus
JLOC1	JLOC1_7431.4	2109	8e-25	1704 - 1763	100	60 / 60	minus
JLOC1	JLOC1_7431.3	2116	8e-25	1711 - 1770	100	60 / 60	minus
JLOC1	JLOC1_7431.2	2146	8e-25	1741 - 1800	100	60 / 60	minus
JLOC1	JLOC1_7431.1	2139	8e-25	1734 - 1793	100	60 / 60	minus
Harvest21	ABC09038	619	1e-23	557 - 616	98	59 / 60	plus
Harvest35	U35_18451	619	3e-25	557 - 616	100	60 / 60	plus

Contig Sequence (619 bp)

>U35_18451 619 Hv_44K_v2
GTTGACATTGGAGCTGGGATTCGTGAACGGGTGACAACATGGTGTATTGGCTTGCTGGTT
GTCTTGGTTGTTATGTTTTGTTCTCTTCAATGCGGGAGCTTTATACAGAAGAAAGAGAGT
GAACGTTCTAGCGGTCCGGTCCAGCTTTCCAAGTTCCTTGGTCGTGAGAAGGAGGAAAGC
GGCAAAAGGAGTGTTATCTCCGGTAAAAAGATAATGATGAAGCTTGAGAAATCCAAGGAA
GATAAGGCGGCTGAGAGCAAGCGCAATGAACTGTTGAAGTTTCTGAATGCCAGTTATGAT
TGACAACTTGTCGAAAGTGGTGATCCTGTCTGGATGGCTTGGATTTGTCTTGATGCCGCT
GCTTAGTCACATCTGCGTTTGGTGATACCAAAAAGCTTTTTGTCCTGTTTTCTAAAGTTA
TGACTCTGACCATCAGTGCTTTATATCGGTATTTTTGAGCTTGTTGGGGTGTTTGTGTTC
TCAAAACTTTGATCGTTGCCAGTTTGTACTTTGTAGCCTCCTTTTTGTAAGCCTGTTTAA
CCTGGAGATATGCCAATTTTATAGAATTTTCCTGGAGTGGTACTTGCTCTAAGCTTGTCA
TACTGGATGTATTCTTATC

Homology of Contig U35_18451 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None