barSeed - Barley Seed Development Database

Probe CUST_24182_PI390587928

Source Contig U35_44721

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24182_PI390587928	Hv_44K_v2	AAATGAATTATGAATTGCAGAAGAAGGCTTCCTACTTTACCAAGGCTGAGCAGCTCAAGG	310	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73954.3	3868	2e-24	337 - 396	100	60 / 60	minus	ABC06045 ABC13768 ABC31161 ABC41631 ABC42806
Harvest21	ABC42806	542	3e-25	311 - 370	100	60 / 60	minus	ABC42806
Harvest35	U35_44721	542	3e-25	311 - 370	100	60 / 60	minus

Contig Sequence (542 bp)

>U35_44721 542 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAATTCAAACAAGCCACGACACAACAGTAGGTACATTTGACAT
ACTTAATTAACATAAACATGAAGCAACATAGGGCAACCCAAGCACGTGAACTACACTACA
TGGGACTAGAGCTACCATTTCTACCAGCAACAACAACCGCCTAATAGGATTTAACCATTT
CTACCAACAACAGAACCATCAATCATCAATCAATTACACTAGCAATTCGTAGCAATGGTG
AAGTTCCAAAGACTTCAAACCCCCTCCCCCGCTTCTACTCTTCTAATCCGTGTAGGCGTC
GTGTACCCGACCTTGAGCTGCTCAGCCTTGGTAAAGTAGGAAGCCTTCTTCTGCAATTCA
TAATTCATTTGAACATCAGTGTGGTGCAAGGATGAAACATTAGTGTGGTGCAAGGCAATG
GATCTCAGGATAAGAAGTAACAGAAGAGGAATAGTTGAAAAACACATGCAAAATGGCAAG
GCGGATATGGAAACTAACATTCAAGCAACAGTTTGAATCGATGAACATAGAGTGTACAAA
TC

Homology of Contig U35_44721 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None