- Probe CUST_24176_PI390587928
- Source Contig U35_44729
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24176_PI390587928 | Hv_44K_v2 | ACTTCGAGAAATTTGGCCGGTGGAATGGACCTGCTCACACTCGACAGCCTCTACGACGAC | 5 | GeneList: darkturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.212 | 0.894 | 1.147 | 1.943 | 1.124 | 1.092 |
| Raw | 4.649 | 42.706 | 45.150 | 122.772 | 24.735 | 26.477 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251445.1 | 2276 | 2e-24 | 1539 - 1598 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_37885.2 | 4141 | 2e-24 | 2728 - 2787 | 100 | 60 / 60 | minus | ABC12882 ABC42310 |
| MLOC | MLOC_37885.1 | 3965 | 2e-24 | 2728 - 2787 | 100 | 60 / 60 | minus | ABC12882 ABC42310 |
| MLOC | MLOC_37885.3 | 2674 | 2e-24 | 1346 - 1405 | 100 | 60 / 60 | minus | ABC12882 ABC42310 |
| JLOC1 | JLOC1_24577.1 | 2720 | 8e-25 | 1291 - 1350 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC42816 | 303 | 3e-25 | 6 - 65 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_44729 | 303 | 3e-25 | 6 - 65 | 100 | 60 / 60 | plus |
Contig Sequence (303 bp)
>U35_44729 303 Hv_44K_v2 TTGCTACTTCGAGAAATTTGGCCGGTGGAATGGACCTGCTCACACTCGACAGCCTCTACG ACGACGCGCACCAGCACGCGCAGCAGAACGCAAGCTACAACCGCTGGGAGCAGCCGGCAC CGGCGGCATGATCGGCTCCCATGGCGTAGATGATGCAGCAGCAGTATCAGCAGCAGCCGA TGCACAACCCGTTGTACGCCTCGGCGCAGCAGCAGCAGGCCTTCATGCTCCAGCAGCAGC AGGCCTTCGCGCTCCAGGAGCAGCACCAGTACCAGCAGCAGGACCAGCAGATGATGATGA TGG
Homology of Contig U35_44729 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |