barSeed - Barley Seed Development Database

Probe CUST_24171_PI390587928

Source Contig U35_20774

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24171_PI390587928	Hv_44K_v2	TTTGCTCAGACGGTGTGTTAGACATAAGTATCAGCTCTTATAGTAAAATATTGGGAACTT	563	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37025.10	4940	2e-24	98 - 157	100	60 / 60	minus	None
MLOC	MLOC_37025.11	5157	2e-24	83 - 142	100	60 / 60	minus	None
Harvest21	ABC14064	630	3e-25	564 - 623	100	60 / 60	plus
Harvest35	U35_20774	630	3e-25	564 - 623	100	60 / 60	plus

Contig Sequence (630 bp)

>U35_20774 630 Hv_44K_v2
AGGCTTGGTTACCAGGTGGCAGATCATTATCTTGCTCAGATGGGTCATTCATGCAGGATG
GATATCCGAGGTCGAACATTGACAGATCTTCAATGAATTCAATGAGTCATCAACATGCTG
TACTTAACCATTTGCCATCTGGAGCACCACATCCAGGCCATGTTGTTCCTCACATGCTGC
CAGCCAAGCCTGATATTCATGCACTTAATTGCTGGAGGCCTTCTGGATGAACTTGTATAA
TTAACTATGCGTTCTTCACATACAGGTTTTGACATGGGAAATTGGAGAAGTTGGGAGCCA
TTTTAAATGGGGATGCAACAAGAGGTGCTTATGTTAGCCTGTTCCGCGATGAGGATGTAC
TTTTGCCTGGGGAGTAATGATGAGATCTGATGTTAGTAATTGGAATGGACATTTTACATT
GTAATTAGTCTTGACAGCGGCATCCAGCAGACTAATTGCTCTTAGTGTAAGCGCATGTTT
TACATGAGACTAGTACTCTCTTGTTCATTTAGATGTTGCTTGTGGTGTGTTTCTTTGAGG
AGTGCAAACTGCGGTCAATGTATTTTGCTCAGACGGTGTGTTAGACATAAGTATCAGCTC
TTATAGTAAAATATTGGGAACTTATATAAA

Homology of Contig U35_20774 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None