barSeed - Barley Seed Development Database

Probe CUST_24160_PI390587928

Source Contig U35_18462

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24160_PI390587928	Hv_44K_v2	TCACCGGCCGTACACGTTCGCGATTACATGTTAATGATATACTCCTTCCGCTAGTTCTTT	1127	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.750	4.713	0.700	0.699	0.984	0.876
Raw	33.311	56.229	6.465	9.756	2.925	2.903

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC11203	1189	3e-25	1127 - 1186	100	60 / 60	plus	ABC11203
Harvest35	U35_18462	1190	3e-25	1128 - 1187	100	60 / 60	plus

Contig Sequence (1190 bp)

>U35_18462 1190 Hv_44K_v2
AGGCCGTCCAAGAAAAACCCCATCGATGGGCATGGGGACAACAGTGCTGCCCGTCGCCCA
CAAGCTCTCGCTCGCCTCCCCCTTCCTCCCGCGCCACCGGCGGCCCTGCCGTCCCCCCGC
CCAGCAGCACTGCCGGCGCCGGCGCCATGGGGCGGTGGTGGCGTACATGGAGCCGGACCC
GAACTCGCCGGCGGCCATCCTGGGGCGCATCGTCGGGGCCCTCCCCGTGGTGGGCCTCGT
GGCGCGCATCCTGAGCGACGACGGCGGCGTCGGCGGCGACACCGTCGACTTCGCCGAGTT
CCGGCGCCGCGTCAGCAAGAAGTGCACCGTCATGGACTCCCAGGCCTTCTACGACTTCAA
CGACCGCCGCGGCAAGGTGGGAGACCCCTTCTACGTCCTGCTGTGCTGCTGGCTGGCCGC
CATTGGCGCCGGGCTGCTGAAAACAGAGGAGATCCTGGAAGGCGTGGCCCGGCTCCGGAT
GTCCAACGACATCCAGTACGAGGAGGAGACCTTCCTCGACATGATGAAGATAGCAAGGGA
GAAACGGGCCAAGTCCAAGAGCCAGGCGCCGGTGATACCGATGGAGGTGCGGGCGGAGAA
GGCGCTGGAGGCCATCTACGTGTGCTGCTTCGGGCAGGAGATGGTGGAGCCGGAGGACGA
GAAGCTGCTGTGCACGATGCTGAACGCGGTGTTCCCGTCGGTGGGGAGGCCGGCGGTGGA
GAGGATGGTGTCCACCATGGCCAAGCAGGTGGCCTCCGGCGAGAGGAGGGGCCCCGACAC
AAAGGTCGTGTCCAAGGAGGTGGCGCAGAGGCAGCTCAAGGACCTCGAGTTCCTGCAGCA
GAACAAGCTGGACTCGGTGTGAGGAGGGGCTCATTTTTTGGCAGCTAGGTCCATGGAGAA
ATGAGAATGGATTTTGATGTAGCCACACACGGTACGGTACGTAGGAGGAACCAACTGCCA
TTGTGGGATTGTAAACGACACGATTTGCAGGGTCGAGTCGATGCTTGCTTGCTATCACTC
TCCTTATTCGTAGTGTTGTTGCAGTGTGATATGAGTGGCACTGCCATGGGCATCAGAAGC
TTGCAAGATAGTACTATAAGATTTGACTCCTGCTCCTTAAAAATATGTCACCGGCCGTAC
ACGTTCGCGATTACATGTTAATGATATACTCCTTCCGCTAGTTCTTTCCA

Homology of Contig U35_18462 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g45030.1	272	4e-145	protein\|calcium homeostasis regulator CHoR1, putative, expressed
Brachypodium v1_2	Bradi2g19260.1	278	3e-162
Arabidopsis v10	AT3G55250.1	277	1e-79	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 46 Blast hits to 46 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:20479302-20480324 FORWARD LENGTH=277