barSeed - Barley Seed Development Database

Probe CUST_2415_PI390587928

Source Contig U35_2053

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2415_PI390587928	Hv_44K_v2	CCTGGCTGTTCATGGATGAAGTGCAATACTATATTGTAGATTGTTATTCATTCAGATCTT	1446	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362698	3879	7e-23	1436 - 1495	98	59 / 60	plus	ABC05403 ABC09810 ABC38368 ABC47648
JLOC1	JLOC1_4473.1	1595	8e-25	1432 - 1491	100	60 / 60	plus
Harvest21	ABC05403	1519	3e-25	1447 - 1506	100	60 / 60	plus	ABC05403
Harvest35	U35_2053	1519	3e-25	1447 - 1506	100	60 / 60	plus

Contig Sequence (1519 bp)

>U35_2053 1519 Hv_44K_v2
GCCCCACCTTCCCCCAGATAAAACCCCTCCTCCCCCCCTCCCCTTCCTCGAACCATCCGT
CCGTCGGCCATGGCCACCGCCGCTGCGTCCCAGGTGGCTTTCTCCGCGCCCGTCGCCGGC
TCGGACCGCGCCGTCAGGAGCTCCGGAATCAAGGGCACCAACAGTCTCAGCTTCGGCAAC
AAGTCATGGATCGGCACCGCATTGGCGTGCGACGGCAAGGCCGCGCTGCAACAGAGCCAT
GTCTGCAGGGCCGTCCAGCAGTCGAGCAAGAGCAAGGTCTCCGTCGCGCCCCTCGACCTG
GAGAGCGCCAAGGAGCCGCCGCTCAACACCTACAAGCCCAAGGGCCCTTACACGGCCACC
ATCGTCTCGGTTGAGCGGGCGGTAGGGCCAAACGCTCCGGGGGAGACATGCCACGTCGTC
ATCGACCATGGTGGTAATGTGCCGTACTGGGAGGGGCAGAGCTATGGGATCATTCCTCCG
GGAGAGAACCCAAAGAAGCCTGGAAACCCACAGAATGTCCGTCTGTATTCAATTGCATCT
ACTAGGTATGGGGATTCGTTTGATGGAAAGACGGCTAGTTTATGTGTTCGCCGTGCAGTT
TATTATGATCCTGAAACTGGCAAGGAGGACCCCTCGAAGAATGGTGTCTGCAGTAATTTC
TTATGCAACTCAAAGCCTGGGGACAAGATTCAGCTGACAGGACCCTCTGGCAAAATAATG
CTTCTACCTGAGAGCGATCCAAATGCAACCCATATCATGATTGCCACTGGCACTGGTGTT
GCTCCCTACCGCGGGTACCTGCGCCGCATGTTCATGGAAGATGTCCCAAATTACAGATTT
GGTGGCCTGGCTTGGCTCTTCCTTGGTGTGGCTAATTCGGACAGCCTTCTCTATGACGAA
GAGTTCACAAGCTACCTTAAGCAGTATCCAGACAATTTCAGGTTTGACAAAGCACTAAGT
AGGGAGCAGAAGAACAAGAGTGGTGGCAAGATGTACGTTCAGGACAAGATTGAAGAGTAC
AGCGACGAGATTTTCAAGCTTTTGGATGGAGGCGCACACATCTACTTCTGTGGTTTGAAA
GGAATGATGCCAGGGATTCAGGATACGCTCAAGAAGGTGGCAGAGCAGAGAGGGGAGAGC
TGGGATCAGAAACTATCGCAGCTCAAGAAGAACAAGCAATGGCACGTTGAGGTTTACTAG
GATGGCAATTGTTCAGCTATCTATAATTCGCTCTGCTATGAGACAATGTCAGGAAAAGGC
AGAACACACACATGGGATGATTCTTGTGATGGTGTAAAATTACCAAACATTATTTTTGAG
AGGATCATAAGACTTTCCATGTAATTCATAAGCTTCTGCATCTCATGATGCGTGAAATGA
AGCATGTAACCTTTGTTCTTATAATTCCTTGGGGTGTTTTGTCTGAAGCCGAATTTAAGC
ACCTGCCCTGGCTGTTCATGGATGAAGTGCAATACTATATTGTAGATTGTTATTCATTCA
GATCTTTAGAGGGCATATA

Homology of Contig U35_2053 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g57120.1	379	protein\|ferredoxin--NADP reductase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g06540.1	381
Arabidopsis v10	AT1G30510.2	382	\| Symbols: ATRFNR2, RFNR2 \| root FNR 2 \| chr1:10807150-10808984 REVERSE LENGTH=382