barSeed - Barley Seed Development Database

Probe CUST_24158_PI390587928

Source Contig U35_18463

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24158_PI390587928	Hv_44K_v2	GTCTGGAGATTCCGTTGATTGTATCAGTTTTATGGCTCCTGTCAATAATAACAATGCAAA	1360	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.902	1.824	1.206	0.778	0.362	0.373
Raw	1876.510	2657.070	1606.980	1585.858	266.279	298.773

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_6735.1	2141	5e-22	1969 - 2030	97	60 / 62	plus
Harvest21	ABC09312	1420	3e-25	1361 - 1420	100	60 / 60	plus	ABC09312
Harvest35	U35_18463	1420	3e-25	1361 - 1420	100	60 / 60	plus

Contig Sequence (1420 bp)

>U35_18463 1420 Hv_44K_v2
TTAGTATTTCAAATGATGACCTTTCAAAATTTGTTGAAACGTCTGATGAATGGATCGCAG
CACGGACTGGGATTCGGAACAGGCGGGTTCTTTCAGGGGGCGAAACACTGGGAGGGCTTT
CAGTACAGGCAGCACAAAGGGCACTTGAGATGGCCCAAGTAAGACCTGAAGATGTTGACC
TTGTTCTCTTTTGCACATCTACTCCAGACGATCTCTTTGGAGGTGCTGGTCGGGTGCTGG
CGGAGGTGGGGTGCACAAATGCATTTGGCTTCGATATCACCGCTGCCTGTAGTGGGTTCA
TTGTTGGTTTAATTACAGCTACTCGTTTTATCAAAGGTGGAGGTATTAAAAATGTCCTTG
TAGTTGGGGCAGATGCTCTTTCACAATATGTGGATTGGACAGATAGAGGTACATGTATCC
TCTTCGGTGATGCTGCTGGTGCTGTTTTGGTCCAGTCTTGCAATGCTGATGAAGATGGTT
TGCTAGGTTTCTGTGTGCAAAGCGATGGCCATGGGCAAAAGCACCTGCATTGTTCATCGT
CGAACGCTGACTCCATCTTATCCAAGACCAATGGTGTCCCTGGCTTCCCACCAAAGAAGA
CCAACTTTTCTTGCATTGAAATGAATGGAAAGGAGGTTTTCCGCTTTGCTGTACGTTGCG
TGCCACAGTCCATCGAAAAGGCGCTAGAGGAAGCCGGCCTACCTGCCTCCAGTATAGATT
GGCTGTTGCTACACCAAGCTAACCAGCGGATCATCGATGCTGCTGCCAACCGGTTATCCA
TCCCATCGGAAAAAGTCATCTCAAACCTTGCTAATTACGGCAACACCAGTGCAGCATCCA
TCCCATTAGCATTGGACGAGGCTGTTCGTGGCGGGAAGGTGAAGACGGGCGATATCATTG
CAGCATCTGGTTTCGGAGCTGGACTCACCTGGGGTTCGGCTATTGTCAAATGGGGCTAAT
CAGTCATCACGAGCGGCGAACTAGCACAGCATACCAAACACCGGTTCCAAAGCTTTTGCC
TCCATATGGCCCTAGGCCTACGTGCCTCTGCGGGGTCATCTACCCTTAGCCTGTCCGGCA
TTTTTCTTTTATATCACCGTCCGTCGTATTTTCTTGCACATGAACAGTGGCAGTTTGCCT
TATTCATCTATTCCTTTGGCCCGTTACACAGATCAGCTGTCATCGTGGCTATCACTACTG
TACTTACTAGCCAACAGCGAGTCTGGATTGTATTCTGTAGTTTTTGAGTGGCATGCTCGA
GTATTTTGCATCTGGGGTGGAAATTGGAAATTTAGCTGGTATTGGAAGGAGGATACTGCA
TTGTAAGTTGTTGTTGAGCCTTCCTAGCAAGGTGTTTTTTGTCTGGAGATTCCGTTGATT
GTATCAGTTTTATGGCTCCTGTCAATAATAACAATGCAAA

Homology of Contig U35_18463 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g55060.1	409	0.0	protein\|3-oxoacyl-synthase III, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi5g23680.1	408	0.0
Arabidopsis v10	AT1G62640.1	404	1e-154	\| Symbols: KAS III \| 3-ketoacyl-acyl carrier protein synthase III \| chr1:23192502-23194737 FORWARD LENGTH=404