barSeed - Barley Seed Development Database

Probe CUST_24150_PI390587928

Source Contig U35_15386

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24150_PI390587928	Hv_44K_v2	TGTGAACATCATCCGTATCCAGAAGCAGCTGCGCTACTTCGAGCAGTACCAGGGCAGGGT	440	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375276	1356	2e-24	452 - 511	100	60 / 60	plus	ABC03996 ABC03998 ABC16208
MLOC	MLOC_67994.1	713	2e-24	447 - 506	100	60 / 60	plus	ABC03996
JLOC1	JLOC1_44949.1	587	8e-25	443 - 502	100	60 / 60	plus
Harvest35	U35_15386	650	3e-25	441 - 500	100	60 / 60	plus

Contig Sequence (650 bp)

>U35_15386 650 Hv_44K_v2
GGCGCAGTCGATCGAGCAGCGATCAAGCCAAGCTAAGCTTAGCCCGACGAGGATATGGGT
GCGCTTGGCGTCCTCCTCGTGATCGTGATGGTAGCAGCCATGGTAGCAGCAGCGGCGGCG
GCAGCAGCTGCTGCAGCAACGGCGAGCGGTCCTCGTCCCTTCTTCGTGTTCGGCGACTCC
CTGGTGGACAGCGGCAACAACAATTACCTGGCCACCACGGCGCGCGCCGACTCGGCGCCC
TACGGCCTCGACTACCCGACCCACCGCGCCACCGGCCGCTTCTCCAACGGCCTCAACGTC
CCCGACATCATCAGCGAGCACCTCGGGGCCGAGCCCGTGCTGCCCTACCTCAGCCCCCAC
CTCGACGGCCACAAGCTGCTCGTCGGCGCCAACTTCGCGTCCGCCGGCGTCGGCATCCTC
AACGACACCGGCATCCAGTTTGTGAACATCATCCGTATCCAGAAGCAGCTGCGCTACTTC
GAGCAGTACCAGGGCAGGGTGCGGCGGCTGATCGGCGAGCCGGCGACGCAGCGGCTGGTG
CGGAGCGCGCTGGTGCTCATCACGCTCGGCGGCAACGACTTCGTCAACAACTACTACCTG
CTGCCCTTCTCCGCCAGGTCCCGCCAGTTCGCGCTCCCGGACTACGTCCG

Homology of Contig U35_15386 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g45150.1	388	1e-96	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi3g12730.1	376	8e-97
Arabidopsis v10	AT3G04290.1	366	6e-89	\| Symbols: ATLTL1, LTL1 \| Li-tolerant lipase 1 \| chr3:1133620-1136223 REVERSE LENGTH=366