barSeed - Barley Seed Development Database

Probe CUST_24149_PI390587928

Source Contig U35_15387

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24149_PI390587928	Hv_44K_v2	CTAGCTAGCTAGCAGATAAATATATCCATAAAATGCATGCATGGTTGCTTGTGAGATAAA	1453	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6294.1	1535	2e-23	1467 - 1524	100	58 / 58	plus	ABC03998 ABC46652
JLOC1	JLOC1_4097.1	1592	1e-23	1516 - 1573	100	58 / 58	plus
Harvest21	ABC03998	1589	2e-21	1454 - 1506	100	53 / 53	plus	ABC03998
Harvest35	U35_15387	1590	3e-25	1454 - 1513	100	60 / 60	plus

Contig Sequence (1590 bp)

>U35_15387 1590 Hv_44K_v2
GCAAGCATACCACACTGCTAGTACATCTCTTTCAGTGGCAAACGGCAAGTGAGTGAGCGA
CTGGAGGGGAGTGTGGAGCGATGGCAGCAATGGCGGCCTCCTCGTGGCGAGTGGCTCTTG
TCGCCGTCGCGCTCTGCGTGCTCCCGGCCCTGCCGGCGGCGAGCGCGGCCCGGGCCTTCT
TCATTTTCGGCGACTCGCTGGTGGACAATGGCAACAACAACTACCTCATGACGACGGCGC
GCGCCGACTCGTGGCCCTACGGCATCGACACCCCGGACCACCGCGCCACGGGGAGGTTCT
CCAACGGCAAGAACGTCGTCGACCTCATCAGCGAGCAGATAGGATCTGTGCCGGTGCTGC
CGTACCTGAGCCCTGAGCTGGACGGCGAGAACCTGCTCGTCGGCGCCAACTTCGCCTCTG
CCGGCATCGGGATCCTCAACGACACCGGCATCCAGTTCGCCAACATCATCCGGATCTCGA
AGCAGCTGACCTACTTCGAGCAGTACAAGCACCGTCTGGCCAAGCTCTACGGCCCGGAGC
GGGCGGCGCGGGTGGTCGGCGGCGCGCTGACGCTCATCACCCTGGGCGGCAACGACTTCG
TCAACAACTACTACCTGGTGCCCTACTCGGCCCGCTCCCGGGAGTTCTCCCTCCCCGACT
ACATCAAGTACATCTTGTCCGAGTACAAGCAGGTGCTCCGCCGCATCCACGGCCTGGGCG
CGCGCCGCATCCTGGTGACCGGCGTCGGGCCCATCGGGTGCGTGCCCGCCGAGCTCGCCA
TGCACAGCCTCGACGGCAGCTGCGACCCGGAGCTGCAGCGCGCGTCCGAGGCCTACAACC
CGCAGATGGAGGCCATGCTCAACGAGCTCAACGCCGAGGTCGGCCCCAGCAACGGCAACG
GCGCCGTGTTCGTGGCCGTGAACACGCGCCGCATGCACGCCGACTTCATCGACGACCCCA
GGGCCTACGGCTTCGTGACGGCCAAGGAGGCCTGCTGCGGCCAGGGGAGGTTCAACGGCA
TCGGCATCTGCACCATGGTGTCCAGCCTCTGCGCCAACCGCGACCAGTACGTGTTCTGGG
ACGCCTTCCACCCCACGGAGCGCGCCAACCGCCTCATCGCCCAGAACTACCTCTCCGGAT
CCACCGACTACATCTCCCCCATGAACCTGTCCACCATCCTACACCTCGACCGCCACCTCC
ACGACTAGAAAGAAGGCTGGGCGATCGATCGATGCATGGTTCAGCCTCGCTCCACCATTT
GCTTTGCGGTTTCATCACTTGCTTGGTGCATTTTCATAAATAGCAGCGCGCGGCCTTCTT
GATTTTGTCCAAGGAATTAAACGTTTAGTTTACGTGTATTCATTCAAAGTACGTATGTAT
GATCCATGTATTTCAGCTGGTATAGCGTGTCGGGTTGAGGTCGTTCTAGCTAGTTTGTGT
AATAATCAGCTAGCTAGCTAGCTAGCAGATAAATATATCCATAAAATGCATGCATGGTTG
CTTGTGAGATAAAAAAAAAAAAAAAAACGGTCGATGTTCATATACTGAACCATGGATGTC
GATTTTGATTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15387 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g57110.1	370	0.0	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi3g55270.1	366	0.0
Arabidopsis v10	AT5G33370.1	366	9e-161	GDSL-like Lipase/Acylhydrolase superfamily protein \| chr5:12602773-12604670 REVERSE LENGTH=366