barSeed - Barley Seed Development Database

Probe CUST_24148_PI390587928

Source Contig U35_15388

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24148_PI390587928	Hv_44K_v2	GCAATAAAAATTGCTGAATAAGCAGAGTATCTGTCCTTTTAATTCGCTCGAGTAGTCAAT	1259	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375276	1356	2e-24	1237 - 1296	100	60 / 60	plus	ABC03996 ABC03998 ABC16208
JLOC1	JLOC1_44950.1	412	8e-25	335 - 394	100	60 / 60	plus
Harvest21	ABC16208	612	3e-25	59 - 118	100	60 / 60	minus	ABC16208
Harvest35	U35_15388	1362	3e-25	1260 - 1319	100	60 / 60	plus

Contig Sequence (1362 bp)

>U35_15388 1362 Hv_44K_v2
GTGTCCACGACGTACGCGCCTTGCCAAGTCGCAGCCACCCACTGGAGCTCGCCAGTTCCA
TAGCTACTCGTGCGACACGAGTCGTCGCGCCGAGGTCCGCCATGGACGCTTGCTCTCAGG
CCCTCGCCGTCGTCGCGGCGCTGCTCCTCCTCGTCGGGGCCTCGGCGCCGACGGCGTCCG
CGGCGCGCGCCTTCTTCGTCTTCGGCGACTCCCTCGTCGACAACGGCAACAACAACTACC
TCATGACGACGGCGCGCGCGGACGCGCCGCCCTACGGCATCGACTTCCCCACGCACATGC
CCACGGGGAGGTTCTCCAACGGGCTCAACATCCCCGACATCATCAGCGAGTACCTCGGGG
CAGAGCCGGCGCTGCCGTACCTGAGCCCCTACATGCGCGGCGACAACCTGCTCGTCGGCG
CCAACTTCGCGTCCGCCGGCGTCGGCATCCTCAACGACACAGGCGTGCAATTCGTGAACA
TCATCAGGATCGCGCAGCAGCTGCAGAACTTCCAGGACTACCAGCGGAGGCTGGCGGCGT
ACATCGGCGAGGACGCGGCGAGGCAGCGCGTGAGCCAGTCGCTGGTGCTCATCACCCTCG
GCGGCAACGACTTCGTCAACAACTACTACCTGGTGCCCTTCTCCGCCAGGTCCCAGCAGT
TCGCGCTCCCCGACTACGTCCGCTACCTCATCGCCGAGTACAAGACCATCCTCCAGCAGC
TCCACGGCCTCGGCGCCCGCCGCGTCCTCGTCACCGGCTCGGGCCCGATCGGCTGCGCGC
CGGCGGAGCTCGCCACGCGGAGCGCCAACGGCGAGTGCGACCTGGAGCTGCAGCGCGCCG
CCGCGCTCTACAACCCGCAGCTGGTGCAGATGACCAAGGAGCTCAACGCCCAGTTCGGCG
CCGACGTCTTCGTCGCCGTCAACGCCTACCGGATGCACATGGACTTCATCTCCGCCCCGG
CGGCGTACGGCTTCGTCACGTCCAAGGTCGCGTGCTGCGGCCAGGGCCCGTACAACGGCG
TGGGGCTGTGCACCGCCATGTCCAGCGTCTGCCCCGACCGCTCCCTCTACGCCTTCTGGG
ACAACTTCCACCCCACCGAGAGGGCCAACCGCATCATCGTCAGCCAGTTCATGGCCGGCT
CGCCGGACTACATGCACCCGCTCAACCTCTCCACCATCCTCGCCATGGACGCCGCCGCAA
TGCCATGATCCATTGCCCTACTATTTTTCTCTATCTTAGTGTGCCAGTAGCATCCGTGCG
CAATAAAAATTGCTGAATAAGCAGAGTATCTGTCCTTTTAATTCGCTCGAGTAGTCAATA
AAAATAATAAAGTAACTACGCTAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15388 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g45150.1	388	0.0	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi3g12730.1	376	0.0
Arabidopsis v10	AT3G04290.1	366	6e-175	\| Symbols: ATLTL1, LTL1 \| Li-tolerant lipase 1 \| chr3:1133620-1136223 REVERSE LENGTH=366