barSeed - Barley Seed Development Database

Probe CUST_24136_PI390587928

Source Contig U35_27366

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24136_PI390587928	Hv_44K_v2	TTGCGTACTGTGCAAGTGCAAGCAAGCGAGCTTCGTGCTTGCAAGCTCAGCTCAGCTCCA	242	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367971	2371	2e-24	710 - 769	100	60 / 60	plus	ABC05420 ABC20222
MLOC	MLOC_67844.3	2342	2e-24	749 - 808	100	60 / 60	plus	ABC20222
MLOC	MLOC_67844.1	2474	2e-24	973 - 1032	100	60 / 60	plus	ABC05420 ABC20222
MLOC	MLOC_67844.2	2499	2e-24	925 - 984	100	60 / 60	plus	ABC20222
JLOC1	JLOC1_44834.1	2302	8e-25	799 - 858	100	60 / 60	plus
Harvest21	ABC24625	667	3e-25	243 - 302	100	60 / 60	plus
Harvest35	U35_27366	667	3e-25	243 - 302	100	60 / 60	plus

Contig Sequence (667 bp)

>U35_27366 667 Hv_44K_v2
GCTCCGTACCCACCGTGGGGGCGGACGCGCTGGTCAGAGCGAATGAGAAGGAATGTGACG
AGATCGGCCGTCCCCATTTCTTTATCGTCGGGGACCCAGCGCCCCTGAGCTGTCATGGCG
TAAGGATCAGAAATCAAATCCCCCGCTGAAATCCATGCAAGCAACCCCCATCCTTCTTCG
TGGTGGCCCTGAGTATCTTATAGGCCAAGCTCCTGTCAGCAGCGGCAGCACAGCACGAGC
GTTTGCGTACTGTGCAAGTGCAAGCAAGCGAGCTTCGTGCTTGCAAGCTCAGCTCAGCTC
CACTGCCCGCTTCCTCCACTCCACCACCACCCGATGGCTCGCGGGCTCGCGGCGCTGCTG
GCGCTGCTAGTGTCGGCGTCGGTGTCATTGCCGGCCGCCGCAGCGCCGGCGGACCAGGAG
GGCGACCGGATCCGGGAGCTCCCGGGGCAGCCGCCCAACGTGGACTTCTCGCACTACTCG
GGCTACGTCACGGTCAACCAGGCCCGTGGCCGCGCGCTCTTTTACTGGCTCGTCGAGGCG
GCGCCGGTGGCCGGGCCCGTCGCGCCGCTCGTTCTATGGCTCAACGGCGGGCCCGGTTGC
TCCTCCGTCGGCTATGGCGCGTCCGAGGAGGTCCGCCCCTTCCGCATCCGGCCCGACGGG
AAGACGC

Homology of Contig U35_27366 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None