barSeed - Barley Seed Development Database

Probe CUST_24111_PI390587928

Source Contig U35_27371

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24111_PI390587928	Hv_44K_v2	AGCATGTGTCATGGTGTACTAAGTATGTCAGGCATATGACTAAGCTCTCTTTTCTGCAAA	514	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55792.1	1118	3e-22	1 - 56	100	56 / 56	minus	ABC38745
JLOC1	JLOC1_36028.1	2337	4e-23	2185 - 2241	100	57 / 57	plus
Harvest35	U35_27371	588	3e-25	515 - 574	100	60 / 60	plus

Contig Sequence (588 bp)

>U35_27371 588 Hv_44K_v2
CTTCACGCATCTGTTCTACAGATATCTGCATCTGCAGGCGGTGATATCCATCATCCTGGC
CACCTTTGCCGGTTTCGGCGTGGGGATGATCGGCAACTCCATCATCATCGAGGTACTGAG
GTGGAGGACGATGGCCCCGGCTCAGCCGCGCCGCGCTCGCAGGCCACCACGTGTGGCGCA
GCAGCAGCAGCAGCAGCAGCCGGCTCCGGCACACAGTCAGCCTTCAGGCCAGCTGTCAGA
CGCCGGTGAGGGACAGCGTAGCGCCACCGTCGACATTGAGAATCCGGCCGCCCCTCAAGC
ATAAGCATATGGAATTTAGTTTGTAGCTATGTGCCGTTGGTTGGTACTCGAGAGTTTGGG
ACCTTGCTGTATAAATGGTAGTGGAAGGAAGAGGCCTGGAAGTTTTTTCATGGTCTGGAT
GCAAAATCTTTCTGAGTTTTTTGTTGCAGCATGTTGTAAGGAACTACTGTGACATGGGAG
TATATAGCAGCTCCTGGCTGAAGAAGGATTCAGTAGCATGTGTCATGGTGTACTAAGTAT
GTCAGGCATATGACTAAGCTCTCTTTTCTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_27371 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None