- Probe CUST_24104_PI390587928
- Source Contig U35_27375
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24104_PI390587928 | Hv_44K_v2 | TACATAATGAATTGCCCACGGCATTCCAATGGAGAATCCTTAAGCTCAGGCGTCGAATAG | 67 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.555 | 1.798 | 1.213 | 0.777 | 0.162 | 0.217 |
| Raw | 113.789 | 208.905 | 119.320 | 116.920 | 8.429 | 13.068 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC52446 | 566 | 3e-25 | 68 - 127 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC52233 | 585 | 3e-25 | 81 - 140 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_50190 | 585 | 3e-25 | 81 - 140 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_27375 | 567 | 3e-25 | 68 - 127 | 100 | 60 / 60 | minus |
Contig Sequence (567 bp)
>U35_27375 567 Hv_44K_v2 CCCTCACGGCGCGCGGTGAGGCGGCCGCGGCGGAAGGAGAGCTAGCGCCTAGCGCCGAGA CCACCTCCTATTCGACGCCTGAGCTTAAGGATTCTCCATTGGAATGCCGTGGGCAATTCA TTATGTATCCAGGCAGTCATCTGGGATCCTGGTTCTGATGGAGCTGTGCGGCCATATCCA GCCAGCGGTGCCGCGGCGACCCCTCTCTCATTCAGCAAGCACCTGAAGTGTGCCAATCTT GCAGTGACCGCCGTGGGGTTCTTCGCCAGCCTCTCAACCGGAGTCCACAGCCGCTCTTCA ACAAAATAAATGAATTTGTAGCTGATGGCCACAATGACGGATATCCAACACCCCTGAAGC AATAGAAATATACCAGATGCTGAATTTCAGGCAGGCTTGATGTTATATGTATTTTTTATA CGTTGCACTTATAGTTAAATTCTACTATGTGGTTTCAAACAATAGTAGTGCTAGTATTCA GTACAACAAGAACAATTCTATTTGTGTCAGTTAAACTTGTAGTCCACGGAGCATATTCTA GAGGACAGTTTATAATGGCACAAATGC
Homology of Contig U35_27375 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |