barSeed - Barley Seed Development Database

Probe CUST_240_PI415269222

Source Contig TA40279_4513

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_240_PI415269222	Hv_44K_v2	GCGTGTACGAGTAATCGGGCTAAAAATTTCCGATAGAGTTCACAGCCAAGCTTTAGTTCC	1591	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.233	1.831	1.239	0.671	0.245	0.268
Raw	2074.903	2675.284	1572.340	1354.948	171.102	206.427

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_418.1	3077	6e-21	2929 - 2987	97	58 / 60	plus

Contig Sequence (1651 bp)

>TA40279_4513 1651 Hv_44K_v2
CGGCACGAGGAATTGTTGTTTGCCTTGATACTTGTGTCTCTGCTTCTGGGAAGACACTTG
TTGTAACTGGGAGCAAAGATAATACTGTAAGATTGTGGGATATGGAAAAGAGAAGCTGTA
TTGGTACTGGTAAAGGCCATCTAGGAGCTATTGGTTGTGTTGCTTTCTCAAAGAAGTCGA
AGAACTTCTTTGTTAGTGGCAGCAGTGACCGAACCATCAAGGTTTGGACCTGGGATGATA
CACTCATTGATGCTGGCGGTGAAGTTCCTCTCAAAGNCAAAGGCTGGTGTAGCTGCACAT
GATAAAGATATTAATTCTCTCTCTGTCTCACCTAATGACGGCCTTGTTTGCAGTGGTTCT
GAGGACCGAACTGCAAGCATATGGAAACTCCCTAACCTAGTGTCCTCTGTTGTCCTTAAA
GGGCATAAAAGGGGCATTTGGTCAGTTGAGTTTTCTCCTGTTGAACAGTGTGTCATAACA
TCATCTGGCGACAAAACTGTCAAAATATGGCATGTTGCTGATGGCTCATGCCTGAAGACA
TTTGAGGGTCATACGTCAAGTGTTTTGAGAGCTTCATTCCTTTCACGTGGAACTCAGTTT
GTTTCTTGTGGAAGCGATGGTCTAGTGAAGCTATGGACGATAAAAACGAATGAGTGCATT
GCTACATATGACAAGCACGATGGGAAGGTTTGGGCACTGGCTGTTGGCAAGAAAACTGAA
ATGCTTGCTACTGGTGGAACTGATTCTGATCTTAACCTTTGGTATGATTGCACGTTGGAA
GATAAGCAGGAGGATTTCCTTAAGAAGGAGGAGGAAGTTTTAAGAGGACAGGAATTGGAA
AATGCAGTGTCAGATTCTGACTATACAAGAGCAATACAACTCGCATTTGAGCTTAGAAGA
CCACGCAGGCTTCTTGAGTTATTCTCACAACTTTGCAGGAAAGCTGATCCAGAGGACCCT
ATAGAAAAAGCCCTTGTTGGTCTCCCAAAGGAAGGGCTTCGCGTGCTTCTTGAGTATATA
CGTGAATGGAATACAAAGCCCAAGTTTTGTCATGTTGCACAGTTTGTGCTTTTTCGGGTG
TTGCGGAGCTTGCCTCCCACTGATATCCTGGAGATAAAAGGCATCAGTGAGCTCCTCGAG
GGCCTCATCCCATATTCGCAAAGGCACTTCAGCAGAGTCGACAGACTTGTACGCAGCACA
TTTTTGCTGGACTACACGTTGACACGGATGTCTGTCGTAGACCCAGACGTAGACGTGGGC
ATAACCAAAGATGTTACAAACGACTCGTCAACGGACAATGTTGAGATTGCGCCAGCAGAG
CCTGAACAAGAGACCCCGGAGAAGCCGGGCAAGAAGAGAAAATCCAGCAAAACAACCCCA
TCAAGCAAGAAAAGTAGTAAGAAGGTGAAGGCTTCTTCGAACGCTGTTTCTGTCGAGGCG
TAAACAGTTAACACTGACCCGTCCTCTCTTCGCGCCACCAATTTTGTAGCCTGCTGTTGT
ACCTTCCTGCCGAACCATATTTATCTTGCTTCGCGACAAACACTGTACAGAATGTATTCT
TTGCGTAGTCGAAAAGACATGCTTGCTTCAGGCGTGTACGAGTAATCGGGCTAAAAATTT
CCGATAGAGTTCACAGCCAAGCTTTAGTTCC

Homology of Contig TA40279_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g50660.1	892	0.0	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi5g20040.1	886	0.0
Arabidopsis v10	AT5G16750.1	876	8e-160	\| Symbols: TOZ \| Transducin family protein / WD-40 repeat family protein \| chr5:5504541-5509266 REVERSE LENGTH=876