barSeed - Barley Seed Development Database

Probe CUST_24088_PI390587928

Source Contig U35_27382

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24088_PI390587928	Hv_44K_v2	CACTGTCACCGGTTATTGCTCCATGTTTGAAGAGACATTTTGAGAAGATAATGGAAAGGA	532	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16969.3	2652	3e-21	1761 - 1820	97	58 / 60	plus	None
MLOC	MLOC_16969.1	4240	3e-21	2275 - 2334	97	58 / 60	plus	ABC16263
MLOC	MLOC_16969.2	3355	3e-21	2055 - 2114	97	58 / 60	plus	ABC16263
JLOC1	JLOC1_11716.2	4016	2e-21	2008 - 2067	97	58 / 60	plus
JLOC1	JLOC1_11716.1	4111	2e-21	2138 - 2197	97	58 / 60	plus
Harvest21	ABC21891	595	3e-25	533 - 592	100	60 / 60	plus
Harvest35	U35_27382	595	3e-25	533 - 592	100	60 / 60	plus

Contig Sequence (595 bp)

>U35_27382 595 Hv_44K_v2
GATCAGCCGGCAATCATATTTTTTGATGAAATAGATGGCCTTGCCCCTGTGAGATCTAGC
AAGCAAGAGCAGATTCACAATTCAATAGTCTCAACATTGCTTGCTCTGATGGACGGTCTT
GATTCGCGTGGACAAGTTGTTTTGATTGGAGCAACCAATCGGATTGATGCCATTGATGGG
GCATTGCGAAGACCTGGCCGTTTTGATCGCGAGTTCTATTTTCCTTTACCTGGCTATGAG
GCACGAGCTGAAATATTGGATATTCATACACGGAAATGGAAGGAACCCCCTCCAAAGGAG
CTAAAGATGGAGCTTGCTGCGAGCTGTGTTGGGTATTGTGGTGCTGATTTGAAAGCATTA
TGTACTGAAGCTGCTATCCGAGCTTTTAGGGAGAAATATCCTCAGGTTTACACAAGTGAT
GACAAGTTTGTCATTGATGTAGACTCGGTCAGGGTTGAGAGGAACCACTTCTTGGAAGCT
ATGTCTACAATAACTCCAGCTGCACATAGGGGAGCAATTGTGCATTCAAGGCCACTGTCA
CCGGTTATTGCTCCATGTTTGAAGAGACATTTTGAGAAGATAATGGAAAGGATTT

Homology of Contig U35_27382 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g33980.1	1199	2e-124	protein\|bromodomain protein 103, putative, expressed
Brachypodium v1_2	Bradi4g35150.1	1196	7e-126
Arabidopsis v10	AT1G05910.1	1210	1e-107	cell division cycle protein 48-related / CDC48-related \| chr1:1790796-1796503 FORWARD LENGTH=1210