barSeed - Barley Seed Development Database

Probe CUST_24082_PI390587928

Source Contig U35_27386

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24082_PI390587928	Hv_44K_v2	TTCCTTATGTGAGGTGCTTGGTATTGACTTTAAACAAACAGTGCATGAGGTGCACCCTAG	743	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12156.2	2769	7e-23	811 - 870	98	59 / 60	plus	ABC18011
MLOC	MLOC_12156.3	2639	7e-23	811 - 870	98	59 / 60	plus	ABC18011
MLOC	MLOC_12156.1	2710	7e-23	908 - 967	98	59 / 60	plus	ABC18011
JLOC1	JLOC1_8141.1	2686	4e-23	811 - 870	98	59 / 60	plus
Harvest21	ABC24287	855	3e-25	744 - 803	100	60 / 60	plus
Harvest35	U35_27386	855	3e-25	744 - 803	100	60 / 60	plus

Contig Sequence (855 bp)

>U35_27386 855 Hv_44K_v2
GATCCAAGGGAAAACATTTCAAATCACTCTCCATCTCCTCCTCTCACCCCCCTCCTCCGC
ACTCTCTCGCTCGCATCCCAGGACCCAGCCGCGCGACCACGACCCCTCCGGCGCTCCCAC
CGCCGCGTCTCGCCGGCGAATCGCCGATACCGCGCAGAGAGATTGCCCATGGCGATGGGT
GGCGCGGTGAAAGACCAGCAGCAGCAGCTCCACCCGTGCGACTCGCTTCTCCTCGAGCTC
AACGTGATCTGGGACGAGGTCGGCGAGCCCGACTCGGTGCGGGACAAGACGCTGCTGGAG
CTAGAGCAGGAGTGTCTCGACGTCTACAGGAGGAAGGTCGACCAGGCCAACCGCTGCAGG
GCTCAGCTGCGGCAATCCATCGCCGAGGCCGAGGCCGAGCTCGCCGGTATCTGTTCGGCC
ATAGGCGAGCCACCGGTTCACATCAGGCAGTCAAACCAGAATTTACATGGTTTAAGGGAG
GAGTTGAATGCAATTATCCCATATTTGGAGGAGATGCGAACTAAAAAGGTTGAAAGATGG
AACCAGTTCGTTCGTGTCCTTGAGGAGATTAAGAAGATTTCATCCGAAATCAGGCCTGCA
GACTTTGTGCCATTTAAAACTCCTGTGGATCAGTCTGATTTGTCATTAAGAAAGTTTGAG
GAGTTAACGAAGGAGCTAGAATCCCTTCAGAAAGAGAAGAGGGAAAGGTTACAGCAAGTG
ATGGATCATTTGAATACATTACATTCCTTATGTGAGGTGCTTGGTATTGACTTTAAACAA
ACAGTGCATGAGGTGCACCCTAGCCTGGACGAAGCTGAAGGGTCAAAGAACCTGAGCAAC
ACTACAATCGAGAGA

Homology of Contig U35_27386 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g49200.1	690	2e-128	protein\|microtubule associated protein, putative, expressed
Brachypodium v1_2	Bradi2g46800.1	689	2e-135
Arabidopsis v10	AT5G51600.1	707	2e-74	\| Symbols: PLE, ATMAP65-3, MAP65-3 \| Microtubule associated protein (MAP65/ASE1) family protein \| chr5:20961061-20964080 REVERSE LENGTH=707