barSeed - Barley Seed Development Database

Probe CUST_24075_PI390587928

Source Contig U35_39364

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24075_PI390587928	Hv_44K_v2	ACTTTTTGAGAAAGCCAATGAGAATCAATGGTTCACTCGACTAGGCCCCAGCAATGTTTG	592	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60721.3	2460	2e-24	1258 - 1317	100	60 / 60	minus	ABC08591
MLOC	MLOC_60721.2	1559	2e-24	1258 - 1317	100	60 / 60	minus	ABC08591
MLOC	MLOC_60721.1	2774	2e-24	1315 - 1374	100	60 / 60	minus	ABC08591
JLOC1	JLOC1_39624.2	3105	8e-25	1552 - 1611	100	60 / 60	plus
JLOC1	JLOC1_39624.1	2606	8e-25	1053 - 1112	100	60 / 60	plus
Harvest21	ABC08591	2007	3e-25	593 - 652	100	60 / 60	plus	ABC08591
Harvest35	U35_39364	676	3e-25	593 - 652	100	60 / 60	plus
Harvest35	U35_1467	3960	3e-25	2546 - 2605	100	60 / 60	plus

Contig Sequence (676 bp)

>U35_39364 676 Hv_44K_v2
CCCGGGCCTGAGGCACGGAGACGCCCGGCGAGGACCCGGCCATGATCGCCGCCTACTCCG
TCGAGTATGTCAAGGGCTTCCAGGGGGAGTACGGCGACGGCAGGGAGGGCAGGATGATGC
TCTCCGCCTGCTGCAAGCACTACATCGCCTATGACTTGGAGAAATGGGGCAAGTTTGCGC
GCTACACCTTCAATGCCGAGGTAAATGCGCAAGATTTCGAGGACACGTACGAGCCTCCTT
TCAAGAGCTGCATCCAGGAGGGTCGTGCAAGTTGCTTGATGTGTTCATACAACCAGGTAA
ATGGTGTGCCAGCATGTGCCCGTAAAGATCTGCTGCAGAAGATTAGGGATGAATGGGGAT
TTAAAGGGTACATCGTATCTGATTGTGATGCAGTGGCAATAATCCACGAAAACCAGACAT
ACACGAGTTCAGATGAAGATTCAGTAGCGATTGTTCTCAAGGCCGGAATGGATGTCAACT
GTGGGTCTTTCCTGATTCGGCATACAAAGTCGGCAATTGAAAAAGGAAAGATACAAGAAG
AAGATATCAACCATGCTCTTTATAATCTGTTTTCTGTTCAGCTACGCCTTGGACTTTTTG
AGAAAGCCAATGAGAATCAATGGTTCACTCGACTAGGCCCCAGCAATGTTTGCACGAAAG
AGCACAGGGAGCTCGC

Homology of Contig U35_39364 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g44840.1	771	7e-138	protein\|glycosyl hydrolase family 3 protein, putative, expressed
Brachypodium v1_2	Bradi5g16557.1	772	2e-142
Arabidopsis v10	AT5G10560.1	792	3e-92	Glycosyl hydrolase family protein \| chr5:3336335-3339351 REVERSE LENGTH=792