- Probe CUST_24066_PI390587928
- Source Contig U35_41684
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24066_PI390587928 | Hv_44K_v2 | CCTGTATGCATCCCCTGAGAAAGTTGATGATGAGACCAGCTTTGGTTATGGCCCAAAAAA | 11 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.571 | 1.998 | 1.231 | 0.818 | 0.334 | 0.381 |
| Raw | 3902.570 | 4747.537 | 2605.663 | 2693.163 | 389.807 | 486.647 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC36768 | 213 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC36768 |
| Harvest35 | U35_41684 | 213 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (213 bp)
>U35_41684 213 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGGCCATAACCAAAGCTGGTCTCATCATCAACTTTCTCAGGGG ATGCATACAGGAATTGGTTGGTCCCATAAATATAACTTCAGGCAACTCTAGAGTTTCCGC ACTGGCCATACAGGTAACAGGCCTTGGCACCAACACGCTGGCGATTGGGTGGTATTCACA CCCATAATAATTTAGAAAACCAAACCCCGCAAA
Homology of Contig U35_41684 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |