- Probe CUST_24061_PI390587928
- Source Contig U35_41687
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24061_PI390587928 | Hv_44K_v2 | GGTTGGTTTGTACTTGTACTGGGTCGTGGCCTTTGTGATTAAATTTAAAATTGCAAGGGC | 24 | GeneList: paleturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 12.466 | 5.899 | 1.269 | 0.806 | 0.300 | 0.300 |
| Raw | 1597.145 | 1219.676 | 237.051 | 251.644 | 30.966 | 33.982 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC36779 | 268 | 3e-25 | 25 - 84 | 100 | 60 / 60 | minus | ABC36779 |
| Harvest35 | U35_41687 | 268 | 3e-25 | 25 - 84 | 100 | 60 / 60 | minus |
Contig Sequence (268 bp)
>U35_41687 268 Hv_44K_v2 TTTTTTTTTTTTTTTTTAAAATATGCCCTTGCAATTTTAAATTTAATCACAAAGGCCACG ACCCAGTACAAGTACAAACCAACCACGAGAGGGGCTACTACTGCTTTGCTAGGGATGACT AAGGCAATTATAAACTTCTTTTTTTTTTTTTTTTAATGGAGTGCCAAGCTACTACGTCCG TACGGTAGTTGATGGATGGTTGTTCAAGTTTTAAATAAACTCGAAACTTTGATGAAACGA GAGAAGGAAAACGTTTAAGCGGGTGCTA
Homology of Contig U35_41687 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |