- Probe CUST_24055_PI390587928
- Source Contig U35_39370
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24055_PI390587928 | Hv_44K_v2 | TTTTTGAAACTGTCATCGCAAGGCTTCCAGTGGCTGCCATTTTTCGATTCCGCACTGTTT | 316 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.416 | 0.666 | 1.732 | 2.685 | 0.899 | 0.997 |
| Raw | 46.699 | 122.267 | 266.936 | 664.448 | 80.543 | 93.726 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK364217 | 1931 | 2e-24 | 510 - 569 | 100 | 60 / 60 | plus | ABC13892 |
| MLOC | MLOC_70188.4 | 1639 | 2e-24 | 856 - 915 | 100 | 60 / 60 | minus | ABC13892 |
| MLOC | MLOC_70188.5 | 1415 | 2e-24 | 702 - 761 | 100 | 60 / 60 | minus | ABC13892 |
| MLOC | MLOC_70188.3 | 1369 | 2e-24 | 1136 - 1195 | 100 | 60 / 60 | minus | ABC13892 |
| MLOC | MLOC_70188.1 | 3426 | 2e-24 | 1570 - 1629 | 100 | 60 / 60 | minus | ABC13892 |
| MLOC | MLOC_70188.2 | 1498 | 2e-24 | 1273 - 1332 | 100 | 60 / 60 | minus | ABC13892 |
| JLOC1 | JLOC1_46569.2 | 2191 | 8e-25 | 675 - 734 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46569.1 | 1750 | 8e-25 | 234 - 293 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46570.1 | 3248 | 8e-25 | 1565 - 1624 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC35479 | 396 | 3e-25 | 317 - 376 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_39370 | 396 | 3e-25 | 317 - 376 | 100 | 60 / 60 | plus |
Contig Sequence (396 bp)
>U35_39370 396 Hv_44K_v2 GGGATGGGGGAGGTGGCGGCGCTGCGGCAGCTGGTCGGCCAGGTGCAGGAGCTCTGGGAC CTCTACGGCGCCGTCCACGCACACGCCCACGGCCCCCTCCCCAGGTGGTATCTACTAGAT TTTGAGCATGGTTCGGTCAAGGATGATTATTGTGGAGAAAGGACTGGATACAACTCGGAA TTGCTGAAGATCATGGAAGCTAACCAATCTCCTCCTCGCAAGCGACCACGCAGAGACAGA AACCGAGAGAAAGCATCCTTCCTGAACTCAGCTGAAGCAATGAAGCTAGATATTTGGAGC GAGTTCCCTGAAGACCTTTTTGAAACTGTCATCGCAAGGCTTCCAGTGGCTGCCATTTTT CGATTCCGCACTGTTTGTCGGAAGTGGTGTTCATAT
Homology of Contig U35_39370 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g69940.1 | 444 | 1e-56 | protein|OsFBX32 - F-box domain containing protein, expressed |
| Brachypodium v1_2 | Bradi2g59200.1 | 446 | 6e-67 | |
| Arabidopsis v10 | None |