- Probe CUST_24044_PI390587928
- Source Contig U35_41696
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24044_PI390587928 | Hv_44K_v2 | TTTTGTGTCCCTTAAAAGACGCAACCGCTCGTCCTGAATCCCCTTGTAAACATTGGGGGG | 64 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.589 | 1.361 | 1.131 | 0.878 | 0.387 | 0.489 |
| Raw | 691.408 | 961.018 | 679.779 | 840.833 | 127.238 | 173.566 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC36803 | 142 | 3e-25 | 65 - 124 | 100 | 60 / 60 | minus | ABC36803 |
| Harvest35 | U35_41696 | 142 | 3e-25 | 65 - 124 | 100 | 60 / 60 | minus |
Contig Sequence (142 bp)
>U35_41696 142 Hv_44K_v2 TTTTTTTTTTTTTTTTTATAAAGGCCAGGCATTTGATTTCCTTGGAAAAAACACACCCCC CCCCCCCCCCAATGTTTACAAGGGGATTCAGGACGAGCGGTTGCGTCTTTTAAGGGACAC AAAAAAGGCCGAATTCATGGTT
Homology of Contig U35_41696 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |