- Probe CUST_24041_PI390587928
- Source Contig U35_41699
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24041_PI390587928 | Hv_44K_v2 | ACGACGATCCTGCTGCCGACCCGCCCCATCAACCGCACGCGGACCACCCTGCGCCGGTCG | 323 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.918 | 1.173 | 1.733 | 1.283 | 0.804 | 0.834 |
| Raw | 52.097 | 94.889 | 132.238 | 148.261 | 33.462 | 38.722 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_35920.1 | 305 | 2e-24 | 182 - 241 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_23149.1 | 224 | 3e-24 | 166 - 224 | 100 | 59 / 59 | minus | |
| Harvest21 | ABC36808 | 473 | 3e-25 | 324 - 383 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_41699 | 473 | 3e-25 | 324 - 383 | 100 | 60 / 60 | plus |
Contig Sequence (473 bp)
>U35_41699 473 Hv_44K_v2 TGGGCGAGGGGACAGTGCTCAGTCCTGATCCCCCACCCCGCGGCGCCGTCGGGTCCGTCC GGCCATGGCCTACTCCAAGGGCGGCGGGATGTCGTCGGCGGTGGACGCCATCCTCGCGGA GGCGGCCGACCTGGTCGCGCTGGAGCAGATCGCCAGGCTCAACACGGCGCACCTCGCCGG CCTCGACGACGCGGCGCTCCCGTCCAGCCTCGAGTCCCGCTTCCGCAAGCTCAAGTCCCT CCCCGCCGCCGCCCCCGCCCCCGCCCCCGCGCCGCCCGCCAAGACCATGGGCCGGAGCGT CACCGCGCCGCCGCAGAGCCGCGACGACGATCCTGCTGCCGACCCGCCCCATCAACCGCA CGCGGACCACCCTGCGCCGGTCGCGCCGGCGAGCCAAGAGCCGAAGGAGCAGAGCCCTCC GCCGCAGCCGCGGGCTGATCCTCCTAAGACGAGCGTCCCCGCGGTTCAAGAGG
Homology of Contig U35_41699 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |