barSeed - Barley Seed Development Database

Probe CUST_24035_PI390587928

Source Contig U35_39385

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24035_PI390587928	Hv_44K_v2	GCGCCCCGCGAACGAGACGCGGCCCGCGTGCCGTTGGAACATCACCGACCCGGACGCGCA	476	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.279	1.496	1.444	1.092	0.493	0.478
Raw	154.243	283.701	235.024	283.150	45.851	47.123

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13798.1	3322	2e-24	1125 - 1184	100	60 / 60	minus	None
MLOC	MLOC_13798.3	2237	2e-24	345 - 404	100	60 / 60	minus	None
MLOC	MLOC_13798.2	2799	2e-24	462 - 521	100	60 / 60	minus	None
JLOC1	JLOC1_9377.1	2929	8e-25	755 - 814	100	60 / 60	minus
JLOC1	JLOC1_9376.1	2827	8e-25	2116 - 2175	100	60 / 60	plus
Harvest21	ABC35502	536	3e-25	477 - 536	100	60 / 60	plus
Harvest35	U35_39385	536	3e-25	477 - 536	100	60 / 60	plus

Contig Sequence (536 bp)

>U35_39385 536 Hv_44K_v2
TTCGGACGAGGGCCCCAGTACGACGTCTACGGGGACCTCCTGGGCCTCCTGGCGGCGCAC
CCGGTGGCGCCGATCGTGACGCTGCACCACCTGGACGTCGTGCAGCCGCTCTTCCCCAAC
GCGCCCGCGCGGCCGGCGGCGGTGCGGAGGCTGTTCAACGGGCCCGTGAAGCTGGACCCG
GCGGGGATAATGCAGCAGTCCATCTGCTACGACGGGGCCAACCGGTGGACGGTGTCGGTG
GCGTGGGGGTTCGCCGTGCTGGTGTCGAGGGGGGTGACCTCGCCGCGGGAGATGGAGATG
CCGGCGCGGACGTTCCTCAACTGGTACCGGCGAGCCGACTACACGGCGTACGCGTTCAAC
ACGCGGCCCCTGGCGCGCACGCCGTGCCACAAGCCCGCCGTGTACTACCTGTCGTCGGCG
CGCAGCGCGGAGGCCGCGCTCGGCGGNGAGACAACGGTGACGCGCTACGACCGGTGGCGC
CCCGCGAACGAGACGCGGCCCGCGTGCCGTTGGAACATCACCGACCCGGACGCGCA

Homology of Contig U35_39385 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g48950.1	525	7e-102	protein\|fringe-related protein, putative, expressed
Brachypodium v1_2	Bradi5g19170.1	521	5e-106
Arabidopsis v10	AT5G41460.1	524	5e-63	Protein of unknown function (DUF604) \| chr5:16589724-16592197 REVERSE LENGTH=524