barSeed - Barley Seed Development Database

Probe CUST_24025_PI390587928

Source Contig U35_39399

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24025_PI390587928	Hv_44K_v2	AGGGTAAGTAGAAATGAGGAGCAGCAACTGGAACATAAATGACTGAAAGTACAACTTGTG	543	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54565.2	2852	2e-24	1870 - 1929	100	60 / 60	minus	None
MLOC	MLOC_54565.3	2787	2e-24	1805 - 1864	100	60 / 60	minus	None
MLOC	MLOC_54565.4	2290	2e-24	1308 - 1367	100	60 / 60	minus	None
MLOC	MLOC_54563.1	3827	2e-24	1742 - 1801	100	60 / 60	minus	None
MLOC	MLOC_54563.2	3998	2e-24	1742 - 1801	100	60 / 60	minus	None
JLOC1	JLOC1_35123.1	5378	8e-25	4623 - 4682	100	60 / 60	minus
JLOC1	JLOC1_35122.8	4458	8e-25	697 - 756	100	60 / 60	plus
JLOC1	JLOC1_35122.7	4881	8e-25	697 - 756	100	60 / 60	plus
JLOC1	JLOC1_35122.6	2171	8e-25	697 - 756	100	60 / 60	plus
JLOC1	JLOC1_35122.5	2666	8e-25	695 - 754	100	60 / 60	plus
JLOC1	JLOC1_35122.4	2119	8e-25	695 - 754	100	60 / 60	plus
JLOC1	JLOC1_35122.3	2601	8e-25	695 - 754	100	60 / 60	plus
JLOC1	JLOC1_35122.2	1995	8e-25	695 - 754	100	60 / 60	plus
JLOC1	JLOC1_35122.1	2104	8e-25	695 - 754	100	60 / 60	plus
Harvest21	ABC35524	628	3e-25	544 - 603	100	60 / 60	plus
Harvest35	U35_39399	628	3e-25	544 - 603	100	60 / 60	plus

Contig Sequence (628 bp)

>U35_39399 628 Hv_44K_v2
GGAAGATTCCGGGCTCTATCTCGTTAGTGCAGATGGGTTTCAGCTCAGTGTGTGGCTCCG
TCGGATGTCGGGCGCCGATAATGGTGCAGGCTGGCTGCTGGTGGACACATTTTGTGTCGG
TGTGGGTCAGGCCTGCACACCTCGCGCAGAGGACAGTTGGGTTCCTCATGATGTTTGCCT
TGATGTTGTCACGGTCGGGGACAATGCTGACTTTGTGTTCTTGGATCATCCAGCAAGTGG
CTCTCTCTTTTATGTTCATATGAGGAGCAGGGTGGTTGAGAAGGTCTATCAGAGGGGGGC
AGATGAATGTGGGTATAAACGTGCAGCTGCTGGCCACGTACGTGTCTCTCCTGTTATGAT
GATCTGGCCGCCTATCTTCCCAGCGCAGAACAAAGTGGGGCATGAGGAATGACCCCCCTG
TGTTTGATCATTGTACTATCTAAACTGAGTATGAGTTCTGCAATAGAGAGAAGGAGCTGT
ACCTTTGCATTGAAGATAAGGAATTTATCATTGCGACCAGTGGTGTAAAAAACCTTTGGA
AGAAGGGTAAGTAGAAATGAGGAGCAGCAACTGGAACATAAATGACTGAAAGTACAACTT
GTGGGAAGGGAACTTCATTTGTGTTCTC

Homology of Contig U35_39399 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None