barSeed - Barley Seed Development Database

Probe CUST_24024_PI390587928

Source Contig U35_15400

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24024_PI390587928	Hv_44K_v2	CTTTGTGTGAAGTTGCTTTGCAATATTGGTGATGATGTGAGGAGGATTTGGTTGCAATCA	468	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54627.4	2851	2e-24	1935 - 1994	100	60 / 60	plus	ABC04534 ABC04535
MLOC	MLOC_54627.1	3422	2e-24	1414 - 1473	100	60 / 60	minus	ABC04534 ABC04535
MLOC	MLOC_54627.2	3649	2e-24	1600 - 1659	100	60 / 60	minus	ABC04534 ABC04535
MLOC	MLOC_54627.3	3385	2e-24	1384 - 1443	100	60 / 60	minus	ABC04534 ABC04535
JLOC1	JLOC1_35171.3	3388	8e-25	1934 - 1993	100	60 / 60	plus
JLOC1	JLOC1_35171.2	3423	8e-25	1946 - 2005	100	60 / 60	plus
JLOC1	JLOC1_35171.1	3636	8e-25	1934 - 1993	100	60 / 60	plus
Harvest21	ABC04536	790	3e-25	469 - 528	100	60 / 60	plus
Harvest35	U35_15400	790	3e-25	469 - 528	100	60 / 60	plus

Contig Sequence (790 bp)

>U35_15400 790 Hv_44K_v2
TTATCAGAGGTCGAGAGCGCCATTGCCACCATTAAGCAGTGCCTTGGGGATCTACCATTC
TTCACTATCTCAGAGGAAGGGGAGACAATTGATTCCTCCAAGCCAGCCCATCCGATGGTG
AACTCTGTCACTGTGTCTTCCAGGCGGCCTGTTGTTCTTGCAGATGGCACTTATGCCACA
CAGAGTGCTGCTACCGAGGCCATTTCGACTCCATCATTTACTCCTGGATCATTATCATCC
ACCCTAAACCTCAGATCACTCATTCTGTCAGGCGATTTTTTCTTAGCTGCAGTTGTTGCA
TGTACCCTTACCAAACTGGTATTAAGGCTGGAGGAGGTGCAACCATCGAAGGTTGAAGCA
AACAAGGCTTGTACTGGGGCCTTGCTGGTCATTACGTCCATTCTTCAGCTGGGGCTATCC
TCCTACCTTCCCCAACCAATTGATAATGATTCATATGACAGGATTGTGCTTTGTGTGAAG
TTGCTTTGCAATATTGGTGATGATGTGAGGAGGATTTGGTTGCAATCATGTAGACAGAGT
TTTGCCAAGATGCTTGCTGAGAAGCAATTCAGGGATACAGAAGAGATGAGGGCCAAGGCA
CAGATCTCTCATGGCCAGCCAGATGATCTTATTGACTTCTACCACCTGAAAAGCAGAAAG
GGCATGAGTCAGCTTGAGTTGGAGGATGAGGTCCAAGATGATTTGAAGGCTGCAACTGGT
GGATTCACCAAGGAAACAGATGGTGCAAATAGACTTAATCGCATTCTTCAGTTGACTGGG
TTCAGTGATC

Homology of Contig U35_15400 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g17430.1	951	1e-155	protein\|coatomer subunit beta-1, putative, expressed
Brachypodium v1_2	Bradi2g10950.1	951	1e-164
Arabidopsis v10	AT4G31480.1	948	1e-114	Coatomer, beta subunit \| chr4:15264145-15267384 FORWARD LENGTH=948