barSeed - Barley Seed Development Database

Probe CUST_24022_PI390587928

Source Contig U35_15402

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24022_PI390587928	Hv_44K_v2	TTGTGTTTTATTAAAGCTGCAAATAAAAGGCCCTCAATGGTCTGGTCGACGAGGAAAAAA	2958	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.569	1.528	1.090	0.684	0.346	0.439
Raw	185.492	268.205	175.275	158.049	31.315	41.875

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7183.1	3820	9e-22	3749 - 3803	100	55 / 55	plus	ABC04534 ABC04535
JLOC1	JLOC1_4738.1	3706	5e-22	3635 - 3689	100	55 / 55	plus
Harvest35	U35_15402	3029	3e-25	2959 - 3018	100	60 / 60	plus

Contig Sequence (3029 bp)

>U35_15402 3029 Hv_44K_v2
CCCCCCTCGGACACCGCCACCACTTCATCCGCCGCCCGCGCTCTCCGCCATCTCGGCGAT
CTACCGCCTCCCACACGGCGACCAGCTCATCCCTGACGCTCCCGAGCTCGTTGAGCGCGC
GCTTGCTTCTGAGCAGGACGCCTCCGCGCGGCGGAACGCTTTCCTCATGCTCTGCCTATG
TGGGCAGGAACGTGCTGTTGCGTACCTATTCTCCAACTCCGAACGTGTTACCGAGTGGCC
CGATCTCCTGCAGATGGCGGCGGTAGACCTCATCCGCAAGGTCTGCCGCTCTCCAAACCG
TGCCGACAAGGGCAGGTATATCAAGATCATAATATCCCTTCTTTCTTCTCCCAGCACAGC
TGTTGTTTATGAGTGTGCTGGGGCGCTGGTGTCCCTCTCCTCGGCGCCCACTGCTGTGCG
TGCTGCCGCCAACAATTACTGCCAGCTCCTCACATCGCAGAGTGACAACAATGTGAGGCT
CATTCTCCTGGACCGTCTGAATGAGCTGCGCACGGCACACCGGGATGTGATGGTGGATGT
TGTGATGGATGTGCTGCGAGCACTTTCCAGCCCGAACCTAGATGTCAAGAGGAAAGTGCT
GGATTTAGTGCTTGATCTGCTCACTCCTCGTAATGTGGAGGAGGTGGTGCTTTACCTCAA
GAAGGAAGTGGTCAAGACACAATCAGGGGAACTTGAGAAGGGTGGCGAGTACCGCCAGAT
GCTGGTGCAAGCGATCCATGCATGTGCTGTAGAGTACCCAGAGGTAGCCGGGTCGGTGGT
GCACCTCCTCATGGACTTCCTTGGTGACACTAATGTCGCGGCAGCAGTTGATGTTGTGCT
ATTTGTGCGTGAAATCATTGAGACTAATCCCAAGCTGCGTGTTTCCATGATCCAGAGACT
CAGTGATACCTTTTATCAGATCCGGGCATCCCGTGTCTGTTCAATCGCTCTCTGGATCCT
CGGGGAGTACTCCCTGTCGTTATCGGAAGTCGAGAGTGCCATTACTACCATCAAGCATTG
CCTTGGGGATCTACCATTGTTCACTCTCTCAGAGGAAGGCGAGACAGCTGATTCCTCCAA
GCCAACTCAGCCCATGGTGAACTCTGTCACTGTGTCTTCCAGGCGGCCTGTTGTTCTTGC
AGATGGCACTTATGCCACACAGAGTGCTGCTACTGAGGCCATTTCGACTCCACCAGTTAC
TGCTGGATCATCGGCATCGACCCTGAATCTCAGATCACTCATTCTGTCAGGTGATTTCTT
CTTGGCTGCGGTTGTTGCCTGTACGCTTACCAAATTGGTATTGAGGCTAGAGGAGGTGCA
GTCATCAAAGATTGAAGCAAACAAGGCTTGTACTGGGGCCTTGCTGGTCATGACGTCCAT
TCTGCAGCTGGGGCTATCCTCGTACCTTCCCCAACCGATTGATAATGATTCATATGACAG
GATCGTGCTTTGTGTGCGGTTGCTTTGCAATACCGGTGATGATGTCAGAAAGATCTGGCT
GCAGTCATGTAGGCAGAGTTTTGCAAAGATGCTTGCTGAGAAGCAATTCAGGGAGACAGA
AGAGATGAAAGCCAAATCACAGATCTCTCATGCCCAGCCAGATGATCTTATTGATTTCTA
CCACCTGAAGAGCAGAAGGGGCATGAGCCAGCTTGAGTTGGAAGATGAGGTCCAAGATGA
TTTGAAGGCTGCAACTGGTGGATTCAGTAAGGAAACAGATGATGCAAACAGACTTAACCG
CATTCTTCAGTTGACTGGGTTCAGTGATCCTGTATATGCTGAAGCGTTTGTGACAGTTCA
TCATTATGATATTGTACTTGATGTTACTGTCATAAACCGTACAAAGGAGACCCTTCAGAA
CCTGTGTTTGGAATTAGCTACAATGGGAGACCTCAAGCTTGTTGACCGCCCTCAGAACTA
TACGTTGGCTCCTGAGTCAAGCAAGCAAATTCGTGCTAATATCAAGGTTTCTTCTACAGA
GACTGGAGTCATATTTGGGAACATAGTCTACGAGACTTCCAATGTGATGGAAAGATCAGT
GGTTGTCCTAAATGATATTCACATTGACATCATGGATTATATCTCACCTGCTACATGCGC
AGATGTTACTTTCCGGAACATGTGGGCAGAATTTGAGTGGGAAAACAAGGTTGCAGTTAA
TACAGTAATTCAAGATGAGAAGGAATTCTTGAATCATGTTATCAAGTCAACAAACATGAA
GTGTCTAACACCACCGTCCGCGCTTGATGGCGAATGTGGTTTCCTTGCCGCAAATCTTTA
TGCAAAGAGCGTGTTTGGAGAAGATGCTTTGGTGAACATTAGCATTGAGAAGCAAGTTGA
TGGCAAGCTCAGCGGTTACATCAGAATAAGGAGCAAGACCCAAGGAATTGCACTCAGCTT
GGGAGACAAGATTACCCTCAAGCAGAAGGGAGGCAGTTAAGCTGTGACGCAATCTGTTGC
AATTGTGTCATGTAGGAGGTCCACTTTGCCAGTTTCATACTACCGGTACAGTGGGCTAGT
AAAGATGTTTTTATAATGTACAAAAGATTAAAGAGAGGGATGAGAAGAGGAAGATCGCAA
GGAAGTCAGTCTTGAGACTGAAGATGGATCTTCAACTAGTGTCCTCGGGAGATGCAATGA
TCTCTCCCAACTCCCTTCCATGATGAGGCCTTTTTTGACAAAAAACGGTGGTGTAAGAAT
AGATGTGAAGTTTGTGTTGGCGTTGGATTGAGATACTGTATTTCGGGTCCCTTTTAATGT
CTCATGCTTTTGTCTTTCAAAAAAAAAAAAAAAAAAAAAAAAGCGTTGGCGTGTTACCGG
TCTCGCTCGTTACTTGTCTTTCAGCTTTACATGTTGTATCCTCCTTTCGCTCTGTGGTGG
CCAGGCCAAACAATTTCTATTCCGGATTGATGTATTTTTATATCCGTGTAGGATTCCAAA
TGCCATGACACACTACTTTTGTGTTTTATTAAAGCTGCAAATAAAAGGCCCTCAATGGTC
TGGTCGACGAGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_15402 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g17430.1	951	protein\|coatomer subunit beta-1, putative, expressed
Brachypodium v1_2	Bradi2g10950.1	951
Arabidopsis v10	AT4G31480.1	948	Coatomer, beta subunit \| chr4:15264145-15267384 FORWARD LENGTH=948