barSeed - Barley Seed Development Database

Probe CUST_2401_PI390587928

Source Contig U35_2067

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2401_PI390587928	Hv_44K_v2	CCTTTGCCCCCTTTGTTTCAAAATATGAAGATTACTATTTTCCTTGAAAGTCAAACCTTG	1666	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.412	2.225	1.238	0.676	0.318	0.399
Raw	97.185	96.681	47.947	41.911	6.013	9.316

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_49629.1	1140	6e-21	1088 - 1140	100	53 / 53	plus
Harvest35	U35_2067	1800	3e-25	1667 - 1726	100	60 / 60	plus

Contig Sequence (1800 bp)

>U35_2067 1800 Hv_44K_v2
GCAAAGTCAGGTGGCCCCCTGAAACAGATCCACCTCCTCAGTTGCGTCTTGCGTGGTGGA
AGACGAGAACCTCCCAAAGGCCAAAGCCCACCCCATAACCCCTAACCTACTAGGGTTTCG
CCGCCATGGGATCCGCCGCCTCCGCCGCCTCCGACGCAGCGCCGCCACCGCCTTCTCCAG
CGCAACCACACGGGGCAGCGCCGCCGTATGGGCATGGGCTCGCCGGCATCCTCCCTCCGA
AGTCGGATGGGGATGATAAGAAGGAGGAGAAGGTGGACTACCTCAACCTACCTTGCCCCG
TGCCGTACGAGGAGATCCAGCGCGAGGCCCTCATGTCTTTGAAGCCTGAACTTTTTGAAG
GTTTGAGGTTTGATTTTACAAAGATGTTAACCCAGAAGTTTGCTCTTAGCCATAGTGTCC
TTATGGGCTCCCTGGAAGTTCCATCTCAGTCAGCTGATGTTATAAAAGTCCCAACATCAC
AGTATGAATTTGGTGCCAACTTTTTAGATCCAAAGTTAATGCTTATCGGAAGGTTGATGA
CTGATGGAAGGCTGAATGCTCGTGTGAAATGTGATCTGACAGAGAATCTCGCGCTGAAAA
TAAATGCGCAGCTTACTAGCGAGCCTCATTACTCTCAAGGGATGTTCAACTTTGACTACA
AGGGCACAGACTACCGAGCACAGTTTCAAATTGGAAATAATGCGTTCTATGGGGCAAATT
ATATCCAGAGTGTTACGCCAAATTTGTCGATGGGAACAGAGATATTCTGGCTTGGTCAGC
AAAGGAAGTCAGGAATTGGATTTAATTCTCGCTACAATACAGATAAAATGGTGGGTACTC
TACAGGTTGCTAGCACTGGTATTGTTGCGTTAAGTTATGTCCAAAAAGTTTCTGAAAAGG
TGTCTCTTGCTACTGACTTTATGTATAACCACATGTCCAGAGATGTGACTTCCAGTGTTG
GTTATGATTATATCCTTAGACAGTGCCGTCTAAGGGGCAAAATTGACTCAAATGGTGTCG
TTGCTGCATACTTGGAGGAGAGACTGAACATGGGTGTCAACTTTCTTCTATCTGCAGAGA
TTGACCATCCAAAGAAGAACTACAAGTTTGGTTTTGGAATGACTGTAGGAGAGTAGATAT
GCTCACAGCAATCACTGTGAGAGTACTACAGATGTCTCCTCAGTTCGTTATAAGTGCAGG
TTTACCATATGGTCTCGGTTCAAGTGGTCGGGACCTGCAGATTCGCTCCTCAAGCGCTCA
GGCTTTTTCGGTGTACTTGCGGCTGTCTCATTTCAGCTGCTTTAGATAGCATGGGCATTT
GGGCGTCCATGATTTTTTGTTGAACAAGCTGAAACGTTGTTGTAATAATGTTCTCTTTGG
CTGTTGGAGATTTTTTGACCCTTAGGTTCCCAGCAATAGGCTTCTGTGAAATGATTGTCC
TCCACAAAGCTACAGATTATACATTGAGAGTTCATTTGCAAAAAAAAAAAAAAAAATGGC
TCTCATATCACTTATATCTTCTTAAATGCACGGCTGCCGAGGTCTTTTTTGCTCGAATTG
ATCTCACATAGGAGTAGTTGCATTCTTTGGGTGCCCGGTCGATCTTGATTCTTACATTAC
TAGAAGGGCTGGGCGTGTTTCGCTGCATTGTTGGGTTGTCGTAATTCCTTTGCCCCCTTT
GTTTCAAAATATGAAGATTACTATTTTCCTTGAAAGTCAAACCTTGTCAAATTTGTAGAG
AAATATATCAATATACACTATCAAATTGTATTAGATTTGTCAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_2067 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g20750.1	338	0.0	protein\|outer mitochondrial membrane porin, putative, expressed
Brachypodium v1_2	Bradi1g63800.1	335	0.0
Arabidopsis v10	AT3G20000.1	309	4e-146	\| Symbols: TOM40 \| translocase of the outer mitochondrial membrane 40 \| chr3:6967685-6970247 FORWARD LENGTH=309