barSeed - Barley Seed Development Database

Probe CUST_24012_PI390587928

Source Contig U35_27529

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24012_PI390587928	Hv_44K_v2	AGGGTTTTGCACAATTTAACTCTGAGCTTGATTCTTCTTCTCTACTGAATTCCCGCCAAA	636	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.519	1.488	1.204	0.834	0.322	0.411
Raw	245.381	372.608	270.064	297.824	39.212	54.616

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52525.1	2698	2e-24	2300 - 2359	100	60 / 60	plus	ABC24943
JLOC1	JLOC1_33667.1	2372	8e-25	2260 - 2319	100	60 / 60	plus
Harvest21	ABC24943	710	3e-25	15 - 74	100	60 / 60	minus	ABC24943
Harvest35	U35_27529	710	3e-25	637 - 696	100	60 / 60	plus

Contig Sequence (710 bp)

>U35_27529 710 Hv_44K_v2
TGTCCGACCCGACGAGGTCACATTTGTGGGTGTCTTATCAGCCTGTAGTCATGCAGGATT
GATTGACGAAGGGCTGGGTTTCTTCAACTCGATGACAAAAGAATACTCATTACAGCCTGT
GGCAGAACACTATGCTTGCATGGTGGATCTACTTGGAAGGGCTGGGAGATTGAGTGAAGC
CTTTAAACTTATTCAGGGAATGCAGATCCAGCCTAATGCTGGTGTATGGGGTGCATTGCT
TGGAGCATGTCGGGTACACAAGAATGACGAGCTCGCGCAGTTTGCAGCCGATAAGTTATT
TGAACTGGAACCTCGCAAGACTTCGAACTTTGTTCTGCTGTCTAACATCAGCGCGGAGGC
AGGCAAGTGGGATGCAGCTGAAAACATGAGGACCTTGATTAAAGAAAGAGGAGTGCGTAA
GCCGCCTGGTTTATCTGGATCGACGTAGAGAATAAGGCCGGCACCGTCTCTTGTCATGAA
TTGCATAAATGAGTGCGGACGTGCTGAAGCGGATGTTACCCGAGTCAGACTCTTGCCTGC
TAAATCCTGGTCGAACGCCAAGATTTGGCATTACAGCGTTAATGCAACGCATGTGCTTGA
GGCAGTAATGTAGCACAACTGTGGAGTGAGGACAGTAGGGTTTTGCACAATTTAACTCTG
AGCTTGATTCTTCTTCTCTACTGAATTCCCGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_27529 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g19260.1	757	4e-66	protein\|tetratricopeptide-like helical, putative, expressed
Brachypodium v1_2	Bradi4g02117.1	695	6e-82
Arabidopsis v10	AT5G44230.1	657	9e-52	Pentatricopeptide repeat (PPR) superfamily protein \| chr5:17814336-17816309 FORWARD LENGTH=657