- Probe CUST_24005_PI390587928
- Source Contig U35_15550
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24005_PI390587928 | Hv_44K_v2 | CCGTGGCGATGATGATGGACGTCCTGTAATTTTAAAATTGTCGAGTTTGAATGATGGATT | 139 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 6.066 | 4.868 | 1.299 | 0.740 | 0.252 | 0.383 |
| Raw | 2023.890 | 2731.344 | 599.386 | 580.764 | 62.290 | 108.064 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK376369 | 917 | 2e-23 | 780 - 837 | 100 | 58 / 58 | plus | ABC04015 ABC04016 |
| MLOC | MLOC_81416.1 | 864 | 2e-23 | 516 - 573 | 100 | 58 / 58 | plus | ABC04015 ABC04016 |
| JLOC1 | JLOC1_54156.1 | 801 | 1e-23 | 517 - 574 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC04016 | 290 | 3e-25 | 92 - 151 | 100 | 60 / 60 | minus | ABC04016 |
| Harvest21 | ABC04015 | 1005 | 4e-24 | 780 - 837 | 100 | 58 / 58 | plus | ABC04015 |
| Harvest35 | U35_15550 | 290 | 3e-25 | 140 - 199 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15551 | 1017 | 4e-24 | 790 - 847 | 100 | 58 / 58 | plus |
Contig Sequence (290 bp)
>U35_15550 290 Hv_44K_v2 CCCGGGCTGCAGGTCCATCTCCCGCGCGCGCGTGTGGTCTCCGCTCTCTTCCCCATCTCC TCGCCAAGAACCACAAGCTAGAGCGCCACCGCCATGGCCATGGCCACGCAAGCCTCGGCG GCGACGCGCCACCTGATCACCGTGGCGATGATGATGGACGTCCTGTAATTTTAAAATTGT CGAGTTTGAATGATGGATTCGGTGATAATGGTTGCATCAGGTTATATGTACATGGTAATT TGATGATGATACTACCGTATGTTGACATTGTTGAAAAAAAAAAAAAAAAA
Homology of Contig U35_15550 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |