barSeed - Barley Seed Development Database

Probe CUST_24003_PI390587928

Source Contig U35_15551

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24003_PI390587928	Hv_44K_v2	CTTCTTTTTACGTTGACTAATGTAGTGTCAAAAGAATGAAACGGAGGTGGTAGTAATTTG	938	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81416.1	864	2e-24	662 - 721	100	60 / 60	plus	ABC04015 ABC04016
JLOC1	JLOC1_54156.1	801	8e-25	663 - 722	100	60 / 60	plus
Harvest21	ABC04015	1005	3e-25	927 - 986	100	60 / 60	plus	ABC04015
Harvest35	U35_15551	1017	3e-25	939 - 998	100	60 / 60	plus

Contig Sequence (1017 bp)

>U35_15551 1017 Hv_44K_v2
CTGGGCCCACCAGACACCACTCCATCTCCCGCGCGCGCGTGTGGTCTCCGCTCTCTTCCC
CATCTCCTCGCCAAGAACCACAAGCTAGAGCGCCACCGCCATGGCCATGGCCACGCAAGC
CTCGGCGGCGACGCGCCACCTGATCACCGCGGCCTGGTCGCCATCCGCCAAGCCCCGCCC
CGCCACCCTCGCCATGCCATCCTCCGCCCGCGGCCCGGCCCCGCTCTTCGCCGCGGCCCC
GGACACCCCCGCACCCGCCGCGCCGCCGGCGGAGCCCGCCCCCGCGGGCTTCGTGCCGCC
GCAGCTGGACCCGTCCACGCCGTCCCCGATCTTCGGCGGCAGCACCGGCGGGCTGCTCCG
CAAGGCCCAGGTCGAGGAGTTTTACGTCATCACCTGGACCTCCCCCAAGGAGCAGGTCTT
CGAGATGCCCACCGGCGGCGCCGCCATCATGCGCGAGGGCCCCAACCTCCTCAAGCTCGC
CCGCAAGGAGCAGTGCCTCGCCCTCGGCAACCGCCTCCGCTCCAAGTACAAGATCGCCTA
CCAGTTCTACCGCGTCTTCCCCAACGGCGAGGTGCAGTACCTCCACCCCAAGGACGGCGT
CTACCCGGAGAAGGTCAACGCCGGCAGGCAGGGCGTGGGACAGAACTTCCGCAGCATCGG
CAAGAACGTCAGCCCCATCGAGGTCAAGTTCACCGGCAAGAACTCCTTCGACATCTAATC
TCGCTCGTACGTCGTATATGTGCATGCTTATGCGTACGTGCTAGTTCATCGACCGGTAGT
TATTGGCGGGTGGCGATGATGATGGACGTCCTGTAATTTTAAAATTGTCGAGTTTGAATG
ATGGATTCGGTGATAATGGTTGCATCAGGTTATATGTACATGGTAATTTGATGATGATAC
TATGTTGACAAAAAAAAAAAAAAAAAATGCATGATCGGCTTCTTTTTACGTTGACTAATG
TAGTGTCAAAAGAATGAAACGGAGGTGGTAGTAATTTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15551 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44680.1	204	3e-96	protein\|photosystem I reaction center subunit II, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g04700.1	205	7e-98
Arabidopsis v10	AT1G03130.1	204	1e-85	\| Symbols: PSAD-2 \| photosystem I subunit D-2 \| chr1:753528-754142 REVERSE LENGTH=204