- Probe CUST_24001_PI390587928
- Source Contig U35_15553
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24001_PI390587928 | Hv_44K_v2 | AACCCCAAGAAGCTTTTCGGAGTTTCCACCCTAGATGTTGTCAGGGCTAACACATTTGTA | 583 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.207 | 0.232 | 1.229 | 2.333 | 1.125 | 1.033 |
| Raw | 147.839 | 251.475 | 1207.440 | 3578.970 | 623.181 | 613.090 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_7780.1 | 1910 | 2e-24 | 806 - 865 | 100 | 60 / 60 | minus | ABC03608 ABC03610 ABC42924 |
| MLOC | MLOC_12615.1 | 1749 | 7e-23 | 707 - 766 | 98 | 59 / 60 | minus | ABC03608 ABC03610 |
| JLOC1 | JLOC1_5132.2 | 1972 | 8e-25 | 924 - 983 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5132.1 | 1833 | 8e-25 | 785 - 844 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_8468.1 | 1847 | 4e-23 | 984 - 1043 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC03611 | 941 | 3e-25 | 879 - 938 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03610 | 1747 | 1e-23 | 883 - 942 | 98 | 59 / 60 | plus | ABC03610 |
| Harvest21 | ABC03608 | 1679 | 1e-23 | 805 - 864 | 98 | 59 / 60 | plus | ABC03608 |
| Harvest35 | U35_15553 | 646 | 3e-25 | 584 - 643 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15554 | 1780 | 1e-23 | 916 - 975 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_15552 | 1679 | 1e-23 | 805 - 864 | 98 | 59 / 60 | plus |
Contig Sequence (646 bp)
>U35_15553 646 Hv_44K_v2 AAGGAGTCATGGCATCACAAGCTTCGGTGGCTTGAAGGCATCGTCGTCGTCATCAATTGG CTTTGAACTCGGCTCTTCATTCCTTGGCAAGACCACATCGCTTCGGGCGTCTGGTGTCAC AAGGGTCGTGCCAAAGGCAAAGTCTGCGGCTCAGATACTACCTGAGGCATCTTACAAAGT GGCAGTACTTGGTGCTGCTGGAGGCATCGGTCAACCATTGGGTCTGTTAATCAAGATGTC TCCTCTGGTCTCAGAACTGCGCCTGTATGATATTGCAAATGTCAAGGGAGTCGCTGCTGA TCTCAGCCACTGCAACACACCTTCTCAGGTCATGGACTTTACCGGCCCTGCAGAACTAGC CAACTGCTTGAAAGGTGTGGATGTCGTTGTCATCCCTGCCGGGGTCCCAAGAAAGCCAGG CATGACTCGTGATGACCTGTTTAACATCAACGCAGGCATTGTCAAGTCGCTTATTGAGGC TGTTGCAGACAATTGCCCTGAGGCCTTTATCCATATTATCAGCAACCCAGTCAACTCCAC AGTGCCAATTGCTGCTGAGATTCTGAAACAGAAGGGTGTCTACAACCCCAAGAAGCTTTT CGGAGTTTCCACCCTAGATGTTGTCAGGGCTAACACATTTGTAGCT
Homology of Contig U35_15553 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g33720.1 | 398 | 9e-118 | protein|lactate/malate dehydrogenase, putative, expressed |
| Brachypodium v1_2 | Bradi3g37140.1 | 399 | 2e-120 | |
| Arabidopsis v10 | AT3G47520.1 | 403 | 5e-95 | | Symbols: MDH | malate dehydrogenase | chr3:17513657-17514868 FORWARD LENGTH=403 |