barSeed - Barley Seed Development Database

Probe CUST_24000_PI390587928

Source Contig U35_15554

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24000_PI390587928	Hv_44K_v2	CTGCTGTTCTTGTAGCTTCCGAAGTTGACAAACCGTGGAATAATAATAAAAGCATTTGTT	1699	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7780.1	1910	2e-24	21 - 80	100	60 / 60	minus	ABC03608 ABC03610 ABC42924
JLOC1	JLOC1_5132.2	1972	8e-25	1709 - 1768	100	60 / 60	plus
JLOC1	JLOC1_5132.1	1833	8e-25	1570 - 1629	100	60 / 60	plus
Harvest21	ABC30666	537	3e-25	461 - 520	100	60 / 60	plus
Harvest21	ABC03610	1747	3e-25	1667 - 1726	100	60 / 60	plus	ABC03610
Harvest21	ABC03609	645	3e-25	580 - 639	100	60 / 60	plus
Harvest21	ABC36781	566	1e-23	21 - 80	98	59 / 60	minus
Harvest35	U35_15554	1780	3e-25	1700 - 1759	100	60 / 60	plus

Contig Sequence (1780 bp)

>U35_15554 1780 Hv_44K_v2
TCGAGCACTGTTGGCCTAGAAAGCCACCTGCCCCCAACCAAGAAACGGAGCAAAGGTTGA
GGCTTGAGGTGAGCAGGAGCCAAGGGCCGCCCCCACCTACCGCCGGCGCCCCCCTCAACC
CCGCCCCCTCGGGCCACGCATCGCCGGCGCCGCTCCCCTACTTCATCCTAGGCCCCCGGG
GCATCCTGCCGCGCCGCTGTCTCCACCCCGTCCCAGGAGTTCTCTGCCGACTGATTCGGT
CTCCTTCCTTCCTTCCCTTCCTTCCAGTTGGACATGGCGTCAGCTTTTACCATGACTTCA
GCCAGTGCTCAGGCCGCTTTGGTTTCAAGGCCAAGGAGTCATGGCATCACAAGCTACGGC
GGCTTGAAGGCATCGTCGTCGTCATCAATTGGCTTCGAACTCGGCTCTTCATTCCTTGGC
AAGACCACATCGCTTCGGGCGTCTGGTGCCACAAGGGTTGTGCCAAAGGCAAAGTCCACA
GCTCAGATACTACCTGAGGCATCTTACAAAGTGGCAGTACTTGGTGCTGCTGGAGGCATC
GGTCAACCATTGGGTCTGTTAATCAAGATGTCTCCTCTGGTCTCAGAACTGCGCCTGTAT
GATATTGCAAATGTCAAGGGAGTCGCTGCTGATCTCAGCCACTGCAACACACCTTCTCAG
GTCATGGACTTCACCGGCCCTGCAGAACTAGCCAACTGCTTGAAAGGTGTGGATGTTGTT
GTCATCCCTGCCGGGGTCCCAAGAAAGCCAGGCATGACTCGTGATGACCTGTTTAACATC
AACGCAGGCATTGTCAAGTCGCTTATTGAGGCTGTTGCAGACAATTGCCCTGAGGCCTTT
ATCCATATTATCAGCAACCCAGTCAACTCCACAGTGCCAATTGCTGCTGAGATTCTGAAA
CAGAAGGGTGTCTACAACCCCCAGAAGCTTTTCGGAGTTTCCACCCTAGATGTTGTCAGG
GCTAACACATTTGTAGCTCAGAAGAAAGACCTCAAGCTCATTGACGTTGATGTCCCAGTT
GTTGGTGGTCATGCTGGAATTACAATCCTACCTCTGTTGTCGAAGGCTAGGCCATCTGTC
ACCTTCACGGATGAGGAAACCGAAGAGCTGACAAAGAGGATACAGAATGCTGGGACAGAG
GTGGTGGAGGCGAAGGCCGGTGCTGGATCTGCTACACTGTCCATGGCCTATGCTGCTGCC
AGATTTGTCGAGTCGTCACTTCGCGCATTGGCTGGTGACCCAGATGTTTACGAGTGCACG
TATGTCCAGTCTGAGCTAACTGAGCTGCCATTCTTTGCGTCCAGAGTTAAGATTGGGAAG
AATGGTGTCGAGTCCATCATCTCTTCCGACTTGGAGGGAGTGACCGAGTACGAGGCCAAG
GCACTCGAGGCATTGAAGCCTGAACTGAAGGCCAGCATCGAGAAGGGCATCGAGTTTGTG
CACAAGCAGCAGGGAGCCACCGCGTCCGTTTGAGGTAAAGGAGAACGATAACTCCGTATG
AAGAGAATAAAGGCAAAATGATTGTCCTCGTCTTAAGTTTTGCAGCCTAGAGTGTTGACA
TCGTGTAGGAAGGAGTATGCCCTGGAGCAGATATATTTCTCAGTTGTCGGTCGGTTTCTT
ATGATTCTAGATTGCATGAGGGCGTGAAGCCCCGAATCGCTCCCTGTTCCGGGGCCTTAT
TTTGTTTGACACATTACACCTGCTGTTCTTGTAGCTTCCGAAGTTGACAAACCGTGGAAT
AATAATAAAAGCATTTGTTTGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_15554 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g33720.1	398	protein\|lactate/malate dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g37140.1	399
Arabidopsis v10	AT3G47520.1	403	\| Symbols: MDH \| malate dehydrogenase \| chr3:17513657-17514868 FORWARD LENGTH=403