barSeed - Barley Seed Development Database

Probe CUST_23_PI390587928

Source Contig U35_7848

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23_PI390587928	Hv_44K_v2	CTAGACTTAGCTGCTGTTGAAGTTCCAGCTATTAATGGATAAGGTTTTTCTGCTAACATA	666	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.360	2.502	0.970	0.867	0.807	0.964
Raw	21422.700	17069.333	6530.410	8431.037	2907.843	3917.400

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_7848	766	3e-25	667 - 726	100	60 / 60	plus

Contig Sequence (766 bp)

>U35_7848 766 Hv_44K_v2
TTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGT
ATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTC
TTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCTGGT
ACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCAC
ATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTG
GTAACCTCTAGTTTGATCAGGGAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAA
TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTA
ATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG
CCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAT
GGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCT
GATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAAC
TTCCCTCTAGACTTAGCTGCTGTTGAAGTTCCAGCTATTAATGGATAAGGTTTTTCTGCT
AACATATAAGAATTTTTGAAAAAAAAAAAAAAACTTTTTGGAAAAA

Homology of Contig U35_7848 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g21192.1	354	2e-157	protein\|photosystem Q, putative, expressed
Brachypodium v1_2	Bradi4g19720.1	354	6e-159
Arabidopsis v10	ATCG00020.1	353	5e-157	\| Symbols: PSBA \| photosystem II reaction center protein A \| chrC:383-1444 REVERSE LENGTH=353