barSeed - Barley Seed Development Database

Probe CUST_23999_PI390587928

Source Contig U35_15555

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23999_PI390587928	Hv_44K_v2	TGTACGCGAGTTATTCGTACTTCACCGACGCAATAAACCAAGGACTTTGGCCACAAAAAA	1307	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.448	6.726	1.317	0.699	0.167	0.235
Raw	633.505	1114.628	175.048	157.231	12.307	18.936

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367687	1379	9e-22	1323 - 1377	100	55 / 55	plus	ABC03981
JLOC1	JLOC1_2820.1	1692	5e-22	1482 - 1536	100	55 / 55	plus
Harvest21	ABC03981	792	3e-25	10 - 69	100	60 / 60	minus	ABC03981
Harvest35	U35_15555	1376	3e-25	1308 - 1367	100	60 / 60	plus

Contig Sequence (1376 bp)

>U35_15555 1376 Hv_44K_v2
GCTCCCTCTCTCTCTCTCTCCATACGCTTCCGAGCGCGCTCTTGAAGCAAGCAAGGCTCC
ACACACCTCTGCCTTCGCATCCGCGAGCTCTGTTGCATTGCCGCAGAGGAGGACCGTCAG
TAGTTCTTTCCACCAGAGTCCGGATCATGGAGTTCGACGAGCGCTGCCTCAAGGTCCAGG
ACCCCAAGTTCGACTGCCTGCTCTTCGACCTCGACGACACTCTGTACCCGCTGAGCTCCG
GGATCTCATCACACGTCAAGACCAACATTGAAGCCTACATGGTTGAGAAGCTGGGTATTG
AGGAGAGCAAGATCGAAAACCTTGGCAACCTGCTGTATAAGAACTATGGCACCACGATGG
CCGGCCTCAGGGCAATTGGCTACAACTTCGATTACGACGAGTACCACAGCTTTGTCCATG
GAAGGCTGCCCTACGACAACATCAAGCCCGACCCCGTTCTCAAGCATATTCTCAAGAACA
TGCGCATCCGCAAGCTCATTTTCACCAACGGTGACATGATCCATGCCGTGAGAGCCCTCA
AGAGGCTGGGCCTGGAGGACTGCTTCGAGGGGATCATCTGCTTCGAGACCCTGAACCCGC
CCTGCCTGCTGCCACAGTGCGACCAGGCGCCCAAGATCTTCGACATCGCCGGCCACTTCG
CCGGGTTAGGCAGCGCCGACGACCTGCCCAGGACCCCCGTCCTATGCAAGCCCAACGTCG
GCGCCATGGAAGCGGCGCTCAGGATCGCCAACGTGAACCCTTACAAGGCGATTTTCTTCG
ACGACAGCGTGCGCAACATTCAGGCAGGCAAGCGAATTGGCCTCCACACGGTGCTGGTTG
GCACGTCACACCGGGTGAAGGGCGCGGATCACGCGCTGGAGAGCATCCACAACATCAGGG
AGGCGCTGCCGGAGCTGTGGGAGGAGGCCGAGAAGACGGAGGACGTCCTCTACGCCGACC
GCGTCGCGATCGAGACATCGGTGACCGCGTAGACGCCGCCGCCGCCGCTGGCTCCCGGTG
CACCTTCAGTCTGATACCCCAAGCGCAACCCGATCCGACCCGGCGTCCCCGAGCCTGCCG
GACTACTGGTGATCATCACGTGGAATTCAGCATTGGCCGGGAAAAAACAGTATCCAGCAC
GAGGAGGGGGGAGCTCAGAAAAGTCAGGAATTAATGCGGCATGCACACCATGCCGGGCCG
GTCCTAATATATGTATATGTATATGGAGTATGTATCGATCAGTCAGATCTTTGCTTGTAA
ATTACTGCTAGGAGGAATGAATAATAAGCAAAAAAACGGGGGTTACTTGTACGCGAGTTA
TTCGTACTTCACCGACGCAATAAACCAAGGACTTTGGCCACAAAAAAAAAAAAAAT

Homology of Contig U35_15555 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g16670.1	284	3e-163	protein\|haloacid dehalogenase-like hydrolase family protein, putative, expressed
Brachypodium v1_2	Bradi1g66710.1	281	4e-179
Arabidopsis v10	AT5G02230.1	280	1e-111	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr5:449132-450507 FORWARD LENGTH=280