barSeed - Barley Seed Development Database

Probe CUST_23993_PI390587928

Source Contig U35_15559

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23993_PI390587928	Hv_44K_v2	GGCTTATGTAGTCTCTTATGTACTCCCTCTGTTCCTAAATATAAGATGTTTTAGCTTCAA	1726	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.573	1.528	1.151	0.837	0.361	0.418
Raw	2713.653	4131.453	2743.113	3108.817	467.485	598.223

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_13295.1	817	1e-23	664 - 721	100	58 / 58	plus
Harvest21	ABC03730	1801	3e-25	1727 - 1786	100	60 / 60	plus	ABC03730
Harvest35	U35_15559	1801	3e-25	1727 - 1786	100	60 / 60	plus

Contig Sequence (1801 bp)

>U35_15559 1801 Hv_44K_v2
GGCTGCAGGTGGAAAACAGCTGAGGAGGTTGCTGCCTTAGTTCGATCGCTTCCTGTAGAA
GAGCAGCCAAAGCAAATTATTGTGACAAGGAAGGGTATGTTGGATCCGTTGGAAGTCCAT
CTGCTTGACTTCCCTAACATTGTTATTAAGGGTAGTGAGTTGCAGCTGCCATTCCAAGCT
TGCTTGAAGATTGAGAAGTTCGGTGATCTTATTCTCAAGGCTACAGAACCTCAGATGGTT
CTATATAACATATACGATGATTGGTTGAAAAGTATCTCATCCTACACTGCATTCTCTCGT
CTTGTGCTTATACTTAGAGCACTACATGTCAATAATGAGAAGGCTAAGATGCTGCTGAAG
CCTGACAAGACAATTGTTACGGAGCCACATCATATCTGGCCAAGTTTGACTGATGAGCAG
TGGCTCAAGGTCGAATGTGCGCTCAGGGATCTCATCCTTTCTGATTATGCAAAGAAAAAC
AACGTTAATACTTCTGCACTTACACAATCTGAGATTCGTGATATAATACTTGGTGCTGAA
ATAGCCCCACCATCACAGCAGAGGCAACAAATAGCTGAGATTGAGAAACAGTCCAAAGAG
ACAACTCAGTTAAATGCAGTTACAACAAGGACAACTAATGTGCATGGTGATGAACTCATT
ATCACGACAACCAGTCCATACGAGCAAGCAGCATTTGCGTCGAAAACAGATTGGCGTGTC
AGGGCCATCTCTGCTACAAACTTATATCTCCGTGTCAACCACATTTATGTTAACTCAGAT
GATATAAAGGAGACTGGCTATACTTACATCATGCCCAAGAATATATTGAAGAAGTTCATA
TGCATAGCAGATCTACGGACACAGGTTGCAGGTTTCCTGTATGGACTGTGTCCACAGGAT
AATCCCCAAGTCAAGGAGATCAGGTGCATATCCATTCCCCCACAGCATGGAACTCACCAG
ATGGTGACTCTGCCAGCGAATCTACCAGAGCATGAGTTCCTCGCGGACTTGGAGCCATTG
GGATGGATGCATACCCAGCCGAATGAAGCTCCTCAGCTATCACCTCAGGACTTGACATCA
CATTCCAAGATTTTGGAGAACAACAAGCAGTGGGATGGTGAGAAGTGCATCATATTGACA
TGCAGCTTCACCCCAGGATCGTGCTCACTTACCGCATACAAATTGACACCAAGCGGTTAC
GAGTGGGGCCGTAGCAACAAGGACAATGGCAGCAACCCACATGGCTATCTACCAACTCAC
TACGAGAAGGTCCAGATGCTTCTCAGTGACCGCTTCCTTGGGTTCTACATGGTCCCGGAC
AACGCTCCCTGGAATTACAACTTCATGGGAGTCAAGCACGACCCATTGATGAAGTACAGC
ATGAAGCTAGGGACGCCCCGAGACTTCTACCACGAGGACCACAGGCCGACACACTTCCTG
GAGTTCAGCAACATTGAGGAGGGTGAGGTCGCTGAGGGGGACAGAGAGGACACCTTCTCG
TAGGCACCGTAGCATGCCCTGCCCCAAATTTTGTTAGCACATCGAAACTAGCTATGAACT
CTCAGCAGTTTTGAAATAGAGACATTTGTAACCTGCAAACTTTGACTTGATACGTGGTAT
GATGTTTGTCTGCCCCTTGAGATGTTATGACTTCTTTTGTAAGCCCGCTCTTCAAGCTGG
GTAATGTACAGTGTCATGCATCATAACAGTGAATATTTTGCTTAGTGGCTTATGTAGTCT
CTTATGTACTCCCTCTGTTCCTAAATATAAGATGTTTTAGCTTCAAAAAAAAAAAAAAAA
A

Homology of Contig U35_15559 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g07050.1	2351	protein\|pre-mRNA-processing-splicing factor 8, putative, expressed
Brachypodium v1_2	Bradi1g48264.1	2351
Arabidopsis v10	AT1G80070.1	2359	\| Symbols: SUS2, EMB33, EMB177, EMB14 \| Pre-mRNA-processing-splicing factor \| chr1:30118052-30127574 FORWARD LENGTH=2359