barSeed - Barley Seed Development Database

Probe CUST_2398_PI390587928

Source Contig U35_2070

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2398_PI390587928	Hv_44K_v2	ATGAGTTTTCCCTCATCTTCTTTACCGCAAAATTTGATGAAGTTGGTGCATCCCAAAAAA	1796	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.302	1.594	1.189	0.845	0.367	0.317
Raw	393.839	755.447	488.073	560.695	82.935	77.780

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_15777.1	2894	6e-21	1922 - 1974	100	53 / 53	plus
JLOC1	JLOC1_15776.1	2679	6e-21	685 - 737	100	53 / 53	minus
Harvest35	U35_2070	1867	3e-25	1797 - 1856	100	60 / 60	plus

Contig Sequence (1867 bp)

>U35_2070 1867 Hv_44K_v2
CTCTGCCGTCACATCCCAGATTCACCCCTTCTGCTCGCTGCTTTCAGCCGGCCTGCCATC
CTCCCTCCCCACTCTCCCCTCGTCGCCAGCCCCGCCGCCGCAGCCGACGGTACCCCCACC
GCCCAGCCCGCCACCCCGAGAGAAGGAGGCCGTCTCCTTCGTCGCCCCTCCCTCCTCTCC
TCCGCTGGGCTCGAGGGGAGCGAAGATCCGCCCGGACGCGGCTCCTCCTGCTGATTTTGG
GGGTTGTTCTCTTACCGCGTCGAGTTTCGGGGATGATGAGCTAAGGAGGTATAGCTCGTG
CAAGCCGCCGCGCCTTTGTTGTTTCTGATAAACCCACGAGCAGGAGCCAGTCTTGCTTGA
GGTGGTAGCGAGAGATGGATGCGGTGTCCGAGGTTGCCGATGCCATCGGTGCATTGGGTG
TTGACAATGGGCCGAGCCAGAAATTTCTGCCCAAAGACAGTCCAGACAACGAAGAGTTGG
CCGATGTGGCGCTTTCGGGCGAGAGTGAGGTGATTAATCCATCTGAAGAGGTGGGTGGGG
AAGCCACCTCGCCATCGGAGGACGTAAAGTCACAACCGGAGGACATCAAGGCCCGTGTTC
CCAAGGGAAGCCAGAGCCGTTCCCCTAAGGTTACCAAATCACAGCGCCAGAGCCCACGGA
GCGGCGATAAGAGTCAAGCTAAGAAAAACACTCCCAGTTCTCCGTATACTAAGGCACCCA
TTGCACGAGTGTCCGATCCAGATTTAGTTGATAGCTCTTCAAGCAATGGTGATGCTGATG
TTAAGAAAAAGGCGGAAAAGAGCAATTCTCGACCAGTTGCTAAGGAGAGCTTGTCGCTCG
AGGATTCAAAGGAGAAGAGGAAAACTCAGAAAGCATCTAACCAACGTGTTGTAAAAAACG
ATGAAGAATCTAATTGTGAAAGAGTAAAGCCTCAGAAGGTTGGCAGCACCCCTTCATATG
GGTTTGCCTTCAAATGCAATGAGAGAGCTGAAAAAAGAAGGGAGTTCTACTCGAAGCTCG
AGGAGAAGATCCATGCACAGGAATTGGAGAAAAATAACATGCAGGCAAAATCAAAGGAAA
TGGAAGAAGCTGAGCTCAGAAAGCTACGGAAAAGTTTGAATTTCAAGGCAGCACCGATGC
CCAGTTTTTATAAGGAACCACCAGCTCCCAAGGTTGAGTTGAAGAAGGTCCCTACCACCA
GACCTCGATCACCAAAGCTTGGTCGCTCAAAGAACACAACCTCAGCAGTCACAACAGTAA
GTACCAATCCTTCAAGCCGTCCAGTTCGTCTGAGCCTCGACCAAAGGGCCTCCCAAAACA
GCGCCAAGACAACACCTGCTCCCAAGAAGTCCCAACGGAAATCTCTCCCCAAATTGCCAT
CAGAGCAGACAGGTTCTGTTGACATTGCAACTTCTATATCTTCTGCAGAACAGCTAGAAA
TTAGCAACTCAACTGCAGATCCCATCCTGACGCCAATCCGTGCTCAGGTTACTCCAGATG
ACCATGTGATCAATGAATAGAAAACAATCGAGTTCAGTCTTTCGGAAAGCTGAGAGTCAT
GCCTCAGCCTCCCATTTCTGCATTTTTGTTATTTGGGTAGTGAACTTCTGGCTGGTATCA
TGTGCTTGAATTAGTGTAATCACCTGGAGTTTGGAACATGGCAAGTAGCCAATGTACTGT
TTATCTTCTCAGTTGTGTTGTGTTCAAACAGTACAAGGGAGTGGTATTATTTGTAGCTAG
TAACATTTGCATATGACTACCTTGTATTTCCAGGTCGCAAGACTTCTTTTCCCCGCATGA
GTTTTCCCTCATCTTCTTTACCGCAAAATTTGATGAAGTTGGTGCATCCCAAAAAAAAAA
AAAAAAA

Homology of Contig U35_2070 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g40450.1	374	3e-155	protein\|targeting protein for Xklp2, putative, expressed
Brachypodium v1_2	Bradi1g36480.1	382	4e-180
Arabidopsis v10	AT4G32330.1	437	2e-53	TPX2 (targeting protein for Xklp2) protein family \| chr4:15609801-15611867 FORWARD LENGTH=437