barSeed - Barley Seed Development Database

Probe CUST_23986_PI390587928

Source Contig U35_41826

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23986_PI390587928	Hv_44K_v2	AAGACAACACTCAAATTGGAGGCATCCAAGACGGCTAACAATGTTTGCTCCTTGAACACT	301	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360732	4885	2e-24	662 - 721	100	60 / 60	plus	ABC16752
MLOC	MLOC_54055.1	1716	2e-24	200 - 259	100	60 / 60	plus	None
MLOC	MLOC_54055.3	1648	2e-24	91 - 150	100	60 / 60	plus	None
MLOC	MLOC_54055.2	3851	2e-24	200 - 259	100	60 / 60	plus	ABC16752
MLOC	MLOC_54055.4	1864	2e-24	88 - 147	100	60 / 60	plus	None
JLOC1	JLOC1_34776.2	3868	8e-25	70 - 129	100	60 / 60	plus
JLOC1	JLOC1_34776.1	3813	8e-25	116 - 175	100	60 / 60	plus
Harvest21	ABC37069	420	3e-25	302 - 361	100	60 / 60	plus
Harvest35	U35_41826	420	3e-25	302 - 361	100	60 / 60	plus

Contig Sequence (420 bp)

>U35_41826 420 Hv_44K_v2
GGCTGCTGGTGCATTGTCTATCAAGATAGGTAAAAAACCAAGGGACCTGTTGAATCCGAA
AGCAGTTAATTCCATGCAGTCACTTTTTGCCGTGAAAGATACTCTTGGCAAAAGAGAAAC
TCGTGAAATTAGCGCACTTTGTGGGCTTACTGTTACACAGGTAAGGGAGTTTTTTGCAAG
TCAGCGTACACGAGTAAGAAAAGCTGTCCGTTTGTCACGAGAGAAAGCACTCAAATTGGA
GGCATCCAAGACAACACTCAAATTGGAGGCATCCAAGACAACACTCAAATTGGAGGCATC
CAAGACAACACTCAAATTGGAGGCATCCAAGACGGCTAACAATGTTTGCTCCTTGAACAC
TGAGCCGCCACCTCTTGACATTGAGACGCATGCTCAAGTTGTCGAACCTTTGAGTACTTT

Homology of Contig U35_41826 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None