barSeed - Barley Seed Development Database

Probe CUST_23981_PI390587928

Source Contig U35_27537

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23981_PI390587928	Hv_44K_v2	GGGGGAGCGCTTCGTCGCGCTCGGCCGCGGCAGCCTCCGCCATCCCCAGTGGCAGGAGGT	309	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356832	1845	2e-24	600 - 659	100	60 / 60	plus	ABC26551
MLOC	MLOC_1413.1	139	3e-22	17 - 72	100	56 / 56	minus	None
Harvest21	ABC23599	369	3e-25	310 - 369	100	60 / 60	plus
Harvest35	U35_27537	369	3e-25	310 - 369	100	60 / 60	plus

Contig Sequence (369 bp)

>U35_27537 369 Hv_44K_v2
CTGACCTACAACCCCAGATCGGTTCCAACCTAGATCCCCAATCCCTCCCCGATCCGCCGC
CATGGACGACGACGACAACTCCCCGTCGCCCTCCCTCTCGCCGGCCTCCTCCTCGCCGCT
CCCGGTCGCCTCAGCGCTCCCCGTCGCCGACCCCGTTACCGTCGCCTCCGCGCCGCCCGG
CGGGCCCCTCACGCTCGCGCTCCCGATCCAGAAGCACGGCTCCTACCCCAGCCACGGCGG
CGGCGGGGGCGGGGGCGGCAGGGAGGATGCCTGGAGCGAGGGCGCCACCTCCGCGCTCAT
CGACGCCTGGGGGGAGCGCTTCGTCGCGCTCGGCCGCGGCAGCCTCCGCCATCCCCAGTG
GCAGGAGGT

Homology of Contig U35_27537 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None