barSeed - Barley Seed Development Database

Probe CUST_23980_PI390587928

Source Contig U35_27539

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23980_PI390587928	Hv_44K_v2	TTGATATGTGTGTATATTTTCTTAACGACTGAATCACCTTTGCAGGATCGCGCAGCACGC	285	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39511.3	2196	2e-24	624 - 683	100	60 / 60	plus	ABC43048
MLOC	MLOC_39511.2	1714	2e-24	1190 - 1249	100	60 / 60	minus	ABC43048
JLOC1	JLOC1_25765.2	1986	8e-25	460 - 519	100	60 / 60	plus
Harvest21	ABC22927	625	3e-25	286 - 345	100	60 / 60	plus
Harvest35	U35_27539	625	3e-25	286 - 345	100	60 / 60	plus

Contig Sequence (625 bp)

>U35_27539 625 Hv_44K_v2
GTGACGTGGGGAGGTTCGGGTCTGGCGAGGGGCTACGGGTTTACAAGGCACTTGAGAAAG
CGGCAGATCGTAAAGTCAAAATCAGGCAAGGGTTGATGTCAACATTTCAAGTGTTGGTTG
TTACCATTACAGTGATTTCTGTGCCATAGGAAGTTGGTTGTCCTGATTATATCAGTGAAT
AACAACATAGGTGCATGCCAGTGATAATGCAGGTTTTGGCGCTGTGCAGTTAACTGCTAT
CGAAGCAATCAAGCAAAAGGAGTTGATGAACAATGAGAAGCAAACTTGATATGTGTGTAT
ATTTTCTTAACGACTGAATCACCTTTGCAGGATCGCGCAGCACGCTGGGTTCGCCCCTGA
TTTCGACCAAGAGAGTGCTAACCTCGCTGCAGGAAGGCCAAATGTTCAGAATGTAACCGT
ACTTTTTGAGGATTGGTGGGGATCCGGCGTTCTGCATGCAAAAGTCTGGATATCCGACAA
AAAGGATGTGTATATTGGATCTGCAAACAATGATTGGAAGTCCCTTACCCAGGTAAAGGA
GCTGGGGATTTATTTCGTTGGTTGTCCACAGATAGCAAAAACTGTTGAAGTGTATTTTCA
AAATCTTTGGACACTTTCAACACTC

Homology of Contig U35_27539 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g44060.1	513	2e-56	protein\|phospholipase D. Active site motif family protein, expressed
Brachypodium v1_2	Bradi1g30930.1	507	1e-58
Arabidopsis v10	None