barSeed - Barley Seed Development Database

Probe CUST_23969_PI390587928

Source Contig U35_15563

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23969_PI390587928	Hv_44K_v2	AGTGGTTCTAGCTTGGACACTTGCAGCATCACTTACAATTTGGCTGCAACCTTTGCTTGA	1190	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.085	0.325	1.171	2.215	1.110	1.386
Raw	30.721	190.328	592.196	1702.431	308.558	417.022

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_42284.2	2324	8e-25	2151 - 2210	100	60 / 60	plus
JLOC1	JLOC1_42284.1	2421	8e-25	2248 - 2307	100	60 / 60	plus
Harvest35	U35_15563	1252	3e-25	1191 - 1250	100	60 / 60	plus

Contig Sequence (1252 bp)

>U35_15563 1252 Hv_44K_v2
CGCGGATCATGGGGGTCCTGGTGTTCTTGGTATGCCTAACACCCCGTATCTTTATGCCGG
CGATTTCATCAGAGTGTTGCGAGAAAAGCATGCTTCCAAAAGCTATTCGAAAATGATTAT
ATATGTTTTAGCATGTGAAAGTGGCAGTATATTTGAGGGTTTATTGCCAGAAGATCTTAA
TATTTATGTTACAACGGCATCGAATGCCGTCGAAAATAGTTGGGGAGCATACTGCCCTGG
GATGAAATCATCACCTCCTACTGAATATGATACCTGTATAGGAGACATCTACAGTGTTTC
TTGGATGGAAGACAGTGAAACTCACAATCTAAAGAAGGAAACACTCAAGCAGCAGTACGA
GGTGGTTAAATCGAGAACATCAAAATCAAAGGAATTCGATAAGGGTTCTCATGTCATGGA
GTATGGTGATAAGACATTCAAGGATGAGAAGCTTTTCCATTATCAAGGTTTCAATCCTGC
AAATTCCAACGTTGCAAACAGGCTGCTTTTGCCCGACCTGGAGGGTGCAATCAATCAAAG
AGATGCTGACATTCTTTTCATGTGGAAGAGGTATGAGAAGTTAAATGGGGGGTCGGAAGA
GAAGCTGGGGGTTCTCAGGGAGATCAAAGAAACTGTGGCACACAGGAAGCACCTCGACAG
CAGTATTGATTTCATCGGGAAGCTTGTCTTTGGATTTGAAAACGGGCCTTCAGTGCTTGA
GGCTGCTAGAAGCTCTGGTCAACCATTAGTCGACGATTGGGATTGTCTAAAGAGGATGGT
GCGAGTTTTCGAATCCCAATGTGGATCACTTACTCAGTATGGCATGAAACACATGAGAGC
ATTTGCAAACATATGCAACAATGGCGTCTCTGAGGCCCAAATGAGGGAGGCAAGCATCAG
TGCTTGCGGCGGTTATAACTTGGCCAAGTGGAGCCCACTGGATCTAGGGCACAGTGCCTG
ATCCGCTGCACTGCAGTACATGGGAACAAATAGAAAATGCTCCAGAGGTTCCTAGACCTC
ATATGGTGTACATACATGCACTAATTTACAAGAAACCACCCAACAATGCGCCCCGTGTGG
GCGTTGGGTTAATCAGTAGTTTGTGGTCGTGCCTTTGTAAGTTTCACCGCAATCAATTGA
AAGGCAAATACTCCTAATTAAAAAAAAAAAATGTGTTTTCCTTTAGCTCCAGTGGTTCTA
GCTTGGACACTTGCAGCATCACTTACAATTTGGCTGCAACCTTTGCTTGAGC

Homology of Contig U35_15563 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g45470.1	498	0.0	protein\|vacuolar-processing enzyme precursor, putative, expressed
Brachypodium v1_2	Bradi5g16960.1	489	0.0
Arabidopsis v10	AT1G62710.1	486	4e-143	\| Symbols: BETA-VPE, BETAVPE \| beta vacuolar processing enzyme \| chr1:23224070-23226857 REVERSE LENGTH=486