barSeed - Barley Seed Development Database

Probe CUST_23960_PI390587928

Source Contig U35_41833

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23960_PI390587928	Hv_44K_v2	AGAAGATCGGCATCAGGAGGCAGCCCATGTCCAGGGACGAGATGGAGACGCTCAACCAGC	166	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62278.1	4456	2e-24	3593 - 3652	100	60 / 60	minus	ABC12495 ABC36881
MLOC	MLOC_62277.1	2969	2e-24	2011 - 2070	100	60 / 60	minus	ABC12495 ABC36881
JLOC1	JLOC1_40744.1	2626	8e-25	1104 - 1163	100	60 / 60	plus
JLOC1	JLOC1_40743.1	3173	8e-25	1916 - 1975	100	60 / 60	minus
Harvest21	ABC37077	468	3e-25	167 - 226	100	60 / 60	plus
Harvest35	U35_41833	468	3e-25	167 - 226	100	60 / 60	plus

Contig Sequence (468 bp)

>U35_41833 468 Hv_44K_v2
GGAGGCCGGGAGCTGTACGCGGCCGCGCTGCAGGAGCAGCAGCAGAACAGCAGGGGGTGG
GACGGCAGCACCCTCTCCAAGGAAGAGATGGGCGCCGTGATGAGGAGCAGGGAGGAAGCC
GCCATCAAGCGCGTGCGCGCGCTGCAGTACGCCTCCATCCAAAACGAGAAGATCGGCATC
AGGAGGCAGCCCATGTCCAGGGACGAGATGGAGACGCTCAACCAGCGCTGGAGCTGGCTG
GAGGAGTGGGTCGGCTCGCAGCCGTTCGACAAGGACGTGGCCATAGACGTGATCACCCAC
CCCCACCCGCCGCCGNCTNGCTCCAGGGACTCCCTCGCCTGCCTCGAGGACGACGACCAC
GACGATGACGGCTACGGCAGGCGGCTCGGCTACTCGTCCAGGCGGTCCTTCGGCCGCGCC
CGGCGCACGCCAGGGAGGGGCGACGACGGACTGCAGGCCTGCTCGCCG

Homology of Contig U35_41833 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None