barSeed - Barley Seed Development Database

Probe CUST_2395_PI390587928

Source Contig U35_2073

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2395_PI390587928	Hv_44K_v2	GGAGTGAAATTGTTGATATACAAGAGTGAAGTGCATCTTTCTGCCATTTGAAAATAAAGC	1429	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55976.1	4267	2e-24	2094 - 2153	100	60 / 60	plus	ABC05623 ABC06682 ABC40598
MLOC	MLOC_55975.1	3741	2e-24	1491 - 1550	100	60 / 60	plus	ABC05623 ABC06682 ABC40598
JLOC1	JLOC1_36155.1	1635	8e-25	1475 - 1534	100	60 / 60	plus
Harvest21	ABC05623	1596	3e-25	1430 - 1489	100	60 / 60	plus	ABC05623
Harvest35	U35_2073	1597	3e-25	1430 - 1489	100	60 / 60	plus

Contig Sequence (1597 bp)

>U35_2073 1597 Hv_44K_v2
TCCGCCGGCCCTGCACACTCGAGTGTGCGAATCTGTCAATCCCCCATGCTCCTCAGGCCG
CCGCTCCCCCTCCCCGTCGCCGTCAGTTCCACTCCCCCACTCTTCTCCCGTCTCGCCGCC
GTCCGCCGTCGGAGCTCGATCGCCGCCACCGGCATGGCAGGGGTCTCCGCGGCCTCTCCC
GCCGCAGCGCAAATCGGCAGCTTCCTCTCCAAGAAGCCCTATGCGCCGCCGTCCTGGGCC
TCGCACCTCGCCCTCGCCCCTCCCCACACCTTCTCCCTCGGCCATTTCCCAACCCCGATT
CACAAGTGGAACCTGCCAAATCTGCCGGAGGGCACTGAAGTATGGATCAAGCGGGATGAT
CTGTCCGGTATGCAGCTGAGCGGGAACAAGGTCCGGAAGCTCGAGTTTCTGCTGTCAGAT
GCCGTCGCGCAGGGTGCAGACTGCGTTATCACTGTCGGTGGTATCCAGAGCAACCATTGC
CGTGCGACGGCAGTGGCTGCCAAGTATCTCAATCTTGACTGCTATTTGATACTGCGTACT
TCCAAGCTTCTTGTGGATGAGGACCCTGGTTTGGTCGGCAATCTCCTTGTTGAGAGACTG
CTGGGAGCACACATTGATCTTGTCTCAAAAGAAGAGTATGGGAAAATTGGCAGTGTGGCT
TTAGCCGACTTGCTTAAAAAGAGGCTTTTGGAAGAAGGACGGAAGCCATATGTGATTCCT
GTTGGTGGATCCAATTCACTTGGAACTTGGGGATATATTGAAGCAGTAAGAGAGCTTGAA
CAACAAATTCAATTATCTGGTGATGTCCAGTTTGATGACATTGTTGTTGCCTGTGGCAGT
GGTGGAACTATTGCTGGTCTTGCTTTAGGATCAAAATTGAGTAGCTTAAAGGCAAAAGTC
CATGCATTCTCTGTTTGCGATGACCCTGAATACTTCTATGATTATGTTCAAGGCCTGATT
GATGGACTACAATCTGGCTTGGACTCACATGATATAGTCAGCATTCAAAATGCTAAGGGC
TTAGGTTATGCCATGAACACAGCTGAGGAGCTTAAGTTTGTTAAAGATATAGCTACAGCA
ACAGGCATTGTGCTTGATCCAGTCTACAGTGGGAAGGGAGCATATGCAATGCTGAAAGAC
ATGGCTGCTAATCCTTCCAAGTGGAATGGGCGGAAAGTCCTCTTTGTCCACACAGGCGGT
CTTCTTGGGTTGTATGACAAGGTTGATCAGATGTCATCTTTGGCTGGGAGCTGGCGCAGA
ATGGATCTTGAAGAATCAGTCCCGCGCAAAGATGGCACTGGTAAGATGTTTTGATTGCTA
TGCTCCAGAAACCGCTTCCATTATGCGTTGGAGTTCCAGAAATGTCATTATTCTTAAGAG
TATATGCTCTTACGTTTGTGAAAGAAAATTCAGAATAGACGGCTAGCGTGGAGTGAAATT
GTTGATATACAAGAGTGAAGTGCATCTTTCTGCCATTTGAAAATAAAGCTATCTGTATTT
CTTATTAAAAAAAAAAAAAAAAACTTTTTTGTTCTATGTAATCTCTGTGTTTAGTTATAT
AATATACAGTCTTGTAATTCCAGAAAGAACTAGTAAA

Homology of Contig U35_2073 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g53330.2	427	protein\|1-aminocyclopropane-1-carboxylate deaminase, putative, expressed
Brachypodium v1_2	Bradi3g57520.1	420
Arabidopsis v10	AT1G48420.1	401	\| Symbols: D-CDES, ATACD1, ACD1 \| D-cysteine desulfhydrase \| chr1:17896767-17898803 REVERSE LENGTH=401