barSeed - Barley Seed Development Database

Probe CUST_23957_PI390587928

Source Contig U35_27541

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23957_PI390587928	Hv_44K_v2	TTCTTTAAAAGTCGGGTTTACAGGAGCTCCCCCTCCTCACCATGCCAAGATGGCAGCGGC	541	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.467	1.199	1.253	0.739	0.732	0.655
Raw	80.255	92.651	93.591	80.807	29.256	29.457

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC25058	627	3e-25	542 - 601	100	60 / 60	plus
Harvest35	U35_27541	627	3e-25	542 - 601	100	60 / 60	plus

Contig Sequence (627 bp)

>U35_27541 627 Hv_44K_v2
TTTCCCCCCGTTCTGCTCTCCTCACCGCCATCCACCGCTGCTCGCCGCCCTCCACCGCCC
CACCACTCCTCTCTCTCCCCGTGCAGCGAACCCTAGCATTCCCTCTCTCTCTCCCACCGG
CGGCGCAGGTTGGTCGGCACTCGGCAGGTAGCGGTCGGCGGCGTCGGAAGCGAGATGAGA
GTCGGCGTCGGCGTCGGCGGGAGCGAGGGCGCGGTGTTCTACACAGACAAGTCCACCCGA
TCCAGGCGGGCAACATCGACGGCACGGACGTCGCCCCCCACGACAACGCCGTCCTCCGCG
CCCTCCTTTGCTCCACCTCCGGCCTCTGTGTGTCCTCTCCGGCCCTCTCCCCCTCCTATC
CACTCCTTTCCCCCCGTTCTGCTCTCCACCCGTTCGCGCATCAACGCTGCGCCTAACTCA
CTATGTATCTGTTTCCCCTTCTTTCTCCAAATGATCCCTTCGGGGACCCCAAGGCCGCTG
GCGACCCCTACGAGAAAGTGAAGAGCGTGCGGCTGGTGCGGGATATTGATGCTGGCCTTC
ATTCTTTAAAAGTCGGGTTTACAGGAGCTCCCCCTCCTCACCATGCCAAGATGGCAGCGG
CGCGATGCCGGTCGAGAACGTTGGCGT

Homology of Contig U35_27541 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None